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prep for 0.9.5 [skip vbump] (#1253)
# Pull Request <!--- Replace `#nnn` with your issue link for reference. --> Fixes #nnn
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DESCRIPTION

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Package: tern
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Title: Create Common TLGs Used in Clinical Trials
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Version: 0.9.4.9010
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Version: 0.9.5
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Date: 2024-06-16
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Authors@R: c(
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person("Joe", "Zhu", , "joe.zhu@roche.com", role = c("aut", "cre")),
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BugReports: https://github.com/insightsengineering/tern/issues
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Depends:
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R (>= 3.6),
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rtables (>= 0.6.7.9004)
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rtables (>= 0.6.8)
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Imports:
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broom (>= 0.5.4),
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car (>= 3.0-13),
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dplyr (>= 1.0.0),
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emmeans (>= 1.8.0),
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forcats (>= 1.0.0),
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formatters (>= 0.5.7.9000),
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formatters (>= 0.5.8),
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ggplot2 (>= 3.5.0),
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grid,
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gridExtra (>= 2.0.0),

NEWS.md

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# tern 0.9.4.9010
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# tern 0.9.5
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### Enhancements
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* Added `facet_var` to `g_lineplot` to allow plot faceting by a factor variable.
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* Updated `g_lineplot` legend to follow factor levels set by users.
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* Added examples and tests for `label_all` parameter to `extract_survival_biomarkers` and `extract_survival_subgroups`.
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* Added the `xticks`, `xlim`, and `ylim` arguments to `g_lineplot` to allow for customization of the x and y axes.
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* Updated `g_lineplot` legend to follow factor levels set by users.
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### Bug Fixes
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* Fixed bug in `s_ancova` that prevented statistics from being printed when arm levels include special characters.
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* Fixed bug in `decorate_grob` that prevented the right margins to be respected when adding title and footers decorations.
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* Fixed a bug in `s_ancova` that prevented statistics from being printed when arm levels include special characters.
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* Fixed a bug in `decorate_grob` that prevented the right margins to be respected when adding title and footers decorations.
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### Miscellaneous
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* Began deprecation of the unused `label_all` parameter to `tabulate_survival_biomarkers` and `tabulate_survival_subgroups`, with redirection to the same parameter in their associated `extract_*` functions.

R/cox_regression.R

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#' @param x (`list`)\cr result of the Cox regression model fitted by [fit_coxreg_univar()] (for univariate models)
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#' or [fit_coxreg_multivar()] (for multivariate models).
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#'
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#' @return [tidy()] returns:
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#' @return [broom::tidy()] returns:
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#' * For `summary.coxph` objects, a `data.frame` with columns: `Pr(>|z|)`, `exp(coef)`, `exp(-coef)`, `lower .95`,
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#' `upper .95`, `level`, and `n`.
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#' * For `coxreg.univar` objects, a `data.frame` with columns: `effect`, `term`, `term_label`, `level`, `n`, `hr`,

R/utils_split_funs.R

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#' Collection of useful functions that are expanding on the core list of functions
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#' provided by `rtables`. See [rtables::custom_split_funs] and [rtables::make_split_fun()]
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#' for more information on how to make a custom split function. All these functions
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#' work with [split_rows_by()] argument `split_fun` to modify the way the split
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#' work with [rtables::split_rows_by()] argument `split_fun` to modify the way the split
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#' happens. For other split functions, consider consulting [`rtables::split_funcs`].
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#'
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#' @seealso [rtables::make_split_fun()]

man/tidy_coxreg.Rd

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man/utils_split_funs.Rd

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