BIOF045-NGS-Data-Analysis-RNA-seq

This repository contains materials for the RNA-seq portion of the FAES course BIOF045 NGS Data Analysis in the cloud.

Topics Covered

• bulk RNA-seq overview: how technology and sample preparation affect analysis
• Transcriptome quantification with Salmon
• bulk RNA-seq analysis with DESeq2
• Gene set enrichment analysis with enrichr and clusterprofiler
• single cell RNA-seq overview: history and different technologies
• single cell RNA-seq analysis with Seurat