This repository contains materials for the RNA-seq portion of the FAES course BIOF045 NGS Data Analysis in the cloud.
Topics Covered
- bulk RNA-seq overview: how technology and sample preparation affect analysis
- Transcriptome quantification with
Salmon - bulk RNA-seq analysis with
DESeq2 - Gene set enrichment analysis with
enrichrandclusterprofiler - single cell RNA-seq overview: history and different technologies
- single cell RNA-seq analysis with
Seurat