Simplified upload scripts removing the use of external actions

kalininalab · Apr 5, 2024 · f73ceb9 · f73ceb9
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commit f73ceb9
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Showing 2 changed files with 20 additions and 12 deletions.
diff --git a/.github/workflows/publish.yaml b/.github/workflows/publish.yaml
@@ -11,9 +11,11 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: Publish DataSAIL to Conda
-      uses: Old-Shatterhand/publish-conda-multichannel-action@v0.0.11
-      with:
-        AnacondaToken: ${{ secrets.DATASAIL_ANACONDA_TOKEN }}
-        Versions: "3.8,3.9,3.10,3.11,3.12"
-        Folder: "recipe"
-        Platforms: "osx-64"
+      env:
+        ANACONDA_TOKEN: ${{ secrets.DATASAIL_ANACONDA_TOKEN }}
+      shell: bash -l {0}
+      run: |
+        conda-build -q --variants "{python: [3.8, 3.9, 3.10, 3.11, 3.12]}" -c conda-forge -c bioconda --output-folder . --no-test recipe
+        conda convert -p osx-64 linux-64/*.tar.bz2
+        anaconda -t "$ANACONDA_TOKEN" upload linux-64/*.tar.bz2
+        anaconda -t "$ANACONDA_TOKEN" upload osx-64/*.tar.bz2
diff --git a/.github/workflows/publish_lite.yaml b/.github/workflows/publish_lite.yaml
@@ -11,9 +11,15 @@ jobs:
     steps:
     - uses: actions/checkout@v4
     - name: Publish DataSAIL-lite to Conda
-      uses: Old-Shatterhand/publish-conda-multichannel-action@v0.0.11
-      with:
-        AnacondaToken: ${{ secrets.DATASAIL_ANACONDA_TOKEN }}
-        Versions: "3.8,3.9,3.10,3.11,3.12"
-        Folder: "recipe_lite"
-        Platforms: "osx-64,osx-arm64,win-64"
+      env:
+        ANACONDA_TOKEN: ${{ secrets.DATASAIL_ANACONDA_TOKEN }}
+      shell: bash -l {0}
+      run: |
+        conda-build -q --variants "{python: [3.8, 3.9, 3.10, 3.11, 3.12]}" -c conda-forge -c bioconda --output-folder . --no-test recipe_lite
+        conda convert -p osx-64 linux-64/*.tar.bz2
+        conda convert -p osx-arm64 linux-64/*.tar.bz2
+        conda convert -p win-64 linux-64/*.tar.bz2
+        anaconda -t "$ANACONDA_TOKEN" upload linux-64/*.tar.bz2
+        anaconda -t "$ANACONDA_TOKEN" upload osx-64/*.tar.bz2
+        anaconda -t "$ANACONDA_TOKEN" upload osx-arm64/*.tar.bz2
+        anaconda -t "$ANACONDA_TOKEN" upload win-64/*.tar.bz2