kmhernan
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yevis-web-test Public
Forked from sapporo-wes/yevis-webWeb application for browsing Yevis workflow registry
TypeScript Apache License 2.0 UpdatedAug 2, 2022 -
mariner Public
Forked from uc-cdis/marinerThe Gen3 Workflow Execution Service
Go Apache License 2.0 UpdatedJul 28, 2021 -
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gdc-fastq-splitter Public
CLI for splitting a fastq that has multiple readgroups
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kmh-dbgap-utils Public
Some helpers for dealing with dbgap xmls
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Fred2 Public
Forked from FRED-2/Fred2Python-based framework for computational immunomics
Python UpdatedMay 8, 2019 -
Curated list of bioinformatics formats and publications
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battenberg Public
Forked from Wedge-lab/battenbergBattenberg R package for subclonal copynumber estimation
R GNU Affero General Public License v3.0 UpdatedFeb 21, 2019 -
gwas-lecture Public
Forked from timeu/gwas-lectureLectures on Genome Wide Association Studies (GWAS) using Python, Limix and Jupyter Noteboos
Jupyter Notebook UpdatedNov 23, 2018 -
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funnel Public
Forked from ohsu-comp-bio/funnelFunnel is a toolkit for distributed task execution via a simple, standard API.
Go MIT License UpdatedDec 28, 2017 -
pyslurm Public
Forked from PySlurm/pyslurmPython Interface to Slurm
Python GNU General Public License v2.0 UpdatedNov 29, 2017 -
pancanmafmerge Public
Forked from covingto/pancanmafmergeA repo for code specifically tailored to the merger of the TCGA PanCan VCF (per-caller) files into a MAF file. This repository borrows from code available in other repositories and has some custom …
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cwl-pretty-graph Public
Creates simple graphviz plots from CWL workflows
Apache License 2.0 UpdatedOct 5, 2017 -
pysam Public
Forked from pysam-developers/pysamPysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
C MIT License UpdatedMay 16, 2017 -
rnaseqc Public
Forked from francois-a/rnaseqcUpdated version of the RNA-SeQC software
Java UpdatedMay 12, 2017 -
python-machine-learning-book Public
Forked from rasbt/python-machine-learning-bookThe "Python Machine Learning" book code repository and info resource
Jupyter Notebook MIT License UpdatedDec 4, 2016 -
Source for workshop documents
Jupyter Notebook UpdatedNov 8, 2016 -
ExScaliburGMD Public
Forked from cribioinfo/ExScaliburGMDPerl GNU Lesser General Public License v3.0 UpdatedAug 17, 2016 -
cwltool Public
Forked from common-workflow-language/cwltoolCommon Workflow Language reference implementation
Web Ontology Language Apache License 2.0 UpdatedApr 15, 2016 -
Publications Public
Repository for scripts associated with a publication
Python The Unlicense UpdatedJan 1, 2016 -
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tacc-launcher-bio Public
Using the TACC launcher to run bioinformatic pipelines
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bamtools Public
Forked from pezmaster31/bamtoolsC++ API & command-line toolkit for working with BAM data
C++ MIT License UpdatedMay 3, 2013