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Merge pull request #1 from limbus-medtec/OPS-2525
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OPS-2525 update for IEM 1.19.1 and bugfix in Nimagen U02
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@roland-ewald
roland-ewald authored Feb 28, 2021
2 parents 4fabbb1 + cded56f commit 44ec21f
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Showing 12 changed files with 142 additions and 2,126 deletions.
10 changes: 7 additions & 3 deletions Applications/GenerateFASTQ.txt
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Expand Up @@ -8,15 +8,14 @@ FASTQ Only
Other

[Compatible Sample Prep Kits]
IDT UDI 8nt UMI
Twist Enrichment UDI
Nimagen UDI
TruSeq DNA PCR-Free
TruSeq Nano DNA
TruSeq Synthetic Long-Read DNA
TruSeq Bovine
Nextera DNA
Nextera DNA Flex
Illumina DNA Prep
Nextera Mate Pair
Nextera Rapid Capture Custom Enrichment
TruSeq DNA Exome Enrichment
Expand Down Expand Up @@ -45,7 +44,12 @@ SureCell WTA 3'
TruSeq RNA Exome Enrichment
Nextera DNA Exome Enrichment
AmpliSeq Library PLUS for Illumina
Nextera Flex for Enrichment
Illumina DNA Prep with Enrichment
Illumina DNA PCR-Free 2x149
Illumina DNA PCR-Free 2x151
Illumina RNA Prep with Enrichment
Illumina Stranded mRNA
Illumina Stranded Total RNA
[Workflow-Specific Parameters]
Label Type LabelInSampleSheet TrueVal FalseVal DefaultVal Required DisplayAsCol
Reverse Complement BOOL ReverseComplement 1 0 FALSE FALSE FALSE
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10 changes: 7 additions & 3 deletions Applications/HiSeqGenerateFASTQ.txt
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Expand Up @@ -7,15 +7,14 @@ HiSeq FASTQ Only
[Category]
HiSeq
[Compatible Sample Prep Kits]
IDT UDI 8nt UMI
Twist Enrichment UDI
Nimagen UDI
TruSeq DNA PCR-Free
TruSeq Nano DNA
TruSeq Synthetic Long-Read DNA
TruSeq Bovine
Nextera DNA
Nextera DNA Flex
Illumina DNA Prep
Nextera Mate Pair
Nextera Rapid Capture Custom Enrichment
TruSeq DNA Exome Enrichment
Expand Down Expand Up @@ -44,7 +43,12 @@ SureCell WTA 3'
TruSeq RNA Exome Enrichment
Nextera DNA Exome Enrichment
AmpliSeq Library PLUS for Illumina
Nextera Flex for Enrichment
Illumina DNA Prep with Enrichment
Illumina DNA PCR-Free 2x149
Illumina DNA PCR-Free 2x151
Illumina RNA Prep with Enrichment
Illumina Stranded mRNA
Illumina Stranded Total RNA
[Workflow-Specific Parameters]
Label Type LabelInSampleSheet TrueVal FalseVal DefaultVal Required DisplayAsCol
Reverse Complement BOOL ReverseComplement 1 0 FALSE FALSE FALSE
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8 changes: 5 additions & 3 deletions Applications/NextSeqGenerateFASTQ.txt
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Expand Up @@ -7,15 +7,14 @@ NextSeq FASTQ Only
[Category]
NextSeq
[Compatible Sample Prep Kits]
IDT UDI 8nt UMI
Twist Enrichment UDI
Nimagen UDI
TruSeq DNA PCR-Free
TruSeq Nano DNA
TruSeq Synthetic Long-Read DNA
TruSeq Bovine
Nextera DNA
Nextera DNA Flex
Illumina DNA Prep
Nextera Mate Pair
Nextera Rapid Capture Custom Enrichment
TruSeq DNA Exome Enrichment
Expand Down Expand Up @@ -44,6 +43,9 @@ SureCell WTA 3'
TruSeq RNA Exome Enrichment
Nextera DNA Exome Enrichment
AmpliSeq Library PLUS for Illumina
Nextera Flex for Enrichment
Illumina DNA Prep with Enrichment
Illumina RNA Prep with Enrichment
Illumina Stranded mRNA
Illumina Stranded Total RNA
[Workflow-Specific Parameters]
Label Type LabelInSampleSheet TrueVal FalseVal DefaultVal Required DisplayAsCol
13 changes: 9 additions & 4 deletions Applications/NovaSeqGenerateFASTQ.txt
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Expand Up @@ -7,15 +7,14 @@ NovaSeq FASTQ Only
[Category]
NovaSeq
[Compatible Sample Prep Kits]
IDT UDI 8nt UMI
Twist Enrichment UDI
Nimagen UDI
TruSeq DNA PCR-Free
TruSeq Nano DNA
TruSeq Synthetic Long-Read DNA
TruSeq Bovine
Nextera DNA
Nextera DNA Flex
Illumina DNA Prep
Nextera Mate Pair
Nextera Rapid Capture Custom Enrichment
TruSeq DNA Exome Enrichment
Expand Down Expand Up @@ -44,7 +43,13 @@ SureCell WTA 3'
TruSeq RNA Exome Enrichment
Nextera DNA Exome Enrichment
AmpliSeq Library PLUS for Illumina
Nextera Flex for Enrichment
Illumina DNA Prep with Enrichment
Illumina DNA PCR-Free 2x149
Illumina DNA PCR-Free 2x151
Illumina RNA Prep with Enrichment
Illumina Stranded mRNA
Illumina Stranded Total RNA
[Workflow-Specific Parameters]
Label Type LabelInSampleSheet TrueVal FalseVal DefaultVal Required DisplayAsCol SuppressInSampleSheet PreventClearing
NovaSeq Xp workflow BOOL NovaSeqXp 1 0 FALSE FALSE FALSE TRUE TRUE
Consumable Version RADIOBUTTONS[Version 1, Version 1.5] ConsumableVersion - - - TRUE - TRUE TRUE
NovaSeq Xp workflow BOOL NovaSeqXp 1 0 FALSE FALSE FALSE TRUE TRUE
15 changes: 0 additions & 15 deletions IndexKits/IDT UDI 8nt UMI 384 Indices.txt
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