im6A-TS-cnn

Description:

im6A-TS-cnn is able to identify multi-tissues in Human, Mouse and Rat.

Installation:

• python3.6
• pandas==1.0.3
• tensorflow-cpu==2.1.0
• numpy==1.18.3

pip install pandas==1.0.3 tensorflow-cpu==2.1.0 numpy==1.18.3

pip install -r yours/requirement.txt

Optional arguments:

  -h, --help            show this help message and exit
  --addresses ADDRESSES
                        Liukeweiaway@hotmail.com
  -i INPUTFILE, --inputFile INPUTFILE
                        -i input.txt (The input file is a complete Fasta
                        format sequence.)
  -o OUTPUTFILE, --outputFile OUTPUTFILE
                        -o output.html (Results are saved under results
                        folder.)
  -s SPECIES, --species SPECIES
                        -m Human/Mouse/Rat (Choose one from three species to
                        use.)
  -m TISSUES, --tissues TISSUES
                        -t Human(brain/liver/kidney/heart/testis) Mouse(brain/liver/kidney) Rat(brain/liver/kidney) (We can choose testis you want.)
  -ts THRESHOLDS, --thresholds THRESHOLDS
                        -ts low/normal/high (We offer 3 options based on the difference in specificity, which are low, normal and high.)

Example:

python im6A-TS-cnn.py -i sequence.txt -o ccc.html -s Human -t brain  -ts normal

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Version number：V0.1.2
Updated date：2020-05-03
Email: Liukeweiaway@hotmai.com

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