Merge pull request #125 from matthiaskoenig/develop

Changes for v0.3.4 - annotation support
matthiaskoenig · Jun 11, 2019 · fb62633 · fb62633
2 parents cd5ec9d + cf08ff7
commit fb62633
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diff --git a/.gitignore b/.gitignore
@@ -34,3 +34,4 @@ sbmlutils/examples/models/glucose/glucose_annotations.xlsx.csv
 .pytest_cache
 .Rhistory
 *.tsv#
+*.xlsx#
diff --git a/README.md b/README.md
@@ -63,6 +63,10 @@ pip install -e .
 ```
 
 ## Release notes
+### 0.3.4
+* improved annotation support (inline annotations, annotation by url)
+* checking against MIRIAM collections and patterns
+
 ### 0.3.1 - 0.3.3
 * libSBML 5.18.0
 * initial distrib support

diff --git a/docs_builder/notebooks/modelcreator.py b/docs_builder/notebooks/modelcreator.py
@@ -10,14 +10,12 @@
 # In[1]:
 
 
-from sbmlutils import comp
 from sbmlutils import fbc
 from sbmlutils import sbmlio
 from sbmlutils import factory
 from sbmlutils.dfba import builder
 
 from sbmlutils.units import *
-from sbmlutils.sbo import *
 from sbmlutils.factory import *
 
 

diff --git a/sbmlutils/_version.py b/sbmlutils/_version.py
@@ -1,7 +1,7 @@
 """
 Definition of version string.
 """
-__version__ = "0.3.3"
+__version__ = "0.3.4"
 
 PROGRAM_VERSION = __version__
 PROGRAM_NAME = 'sbmlutils'
-Original file line number
+Diff line change
@@ Expand Up @@
     .pytest_cache
     .Rhistory
     *.tsv#
+    *.xlsx#