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 Model : annotation_example_8

+ Creator
Matthias, Koenig, Humboldt-University Berlin, Institute for Theoretical Biology, koenigmx@hu-berlin.de
Created: 2019-06-03 23:57
Modified: 2019-06-03 23:57

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id annotation_example_8 meta_annotation_example_8
nameannotation_example_8
times
substancemole
extentmole
volumem3
aream2
lengthm
+ 		+ L3V1 fbc-V2 comp-V1
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Model with inline annotations

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Description

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Test model demonstrating inline annotations. +

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The content of this model has been carefully created in a manual research effort.
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This file has been created by + Matthias Koenig.
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Terms of use

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Copyright © 2019 Matthias Koenig.
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Redistribution and use of any part of this model, with or without modification, are permitted provided + that the following conditions are met: +

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  1. Redistributions of this SBML file must retain the above copyright notice, this list of conditions and + the following disclaimer.
    2. +
  2. Redistributions in a different form must reproduce the above copyright notice, this list of conditions + and the following disclaimer in the documentation and/or other materials provided + with the distribution.
    3. +
+ This model is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the + implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. +

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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
UnitDefinitions [7]nameunitssbocvterm
kg + + + + + + kg +
s + + + + + + s +
m + + + + + + m +
m2 + + + + + + + + m + 2 + +
m3 + + + + + + + + m + 3 + +
mM + + + + + + + + + + + + 10 + + + 3 + + + mole + + litre + +
mole_per_s + + + + + + + + mole + s + +
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+ + + + +

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Compartments [3]namesizeconstantspatial dimensionsunitsderived unitssbocvterm
ext meta_ext + + + + external + + Vol_e +3m3 + + + + m + 3 + +
SBO:0000290
BQB_IS
BTO:0000089
cyto meta_cyto + + + + cytosol + + Vol_c +3m3 + + + + m + 3 + +
SBO:0000290
BQB_IS
GO:0005829
pm meta_pm + + + + membrane + + A_m +2m2 + + + + m + 2 + +
SBO:0000290
BQB_IS
GO:0005886
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Species [2]namecompartmenthasOnlySubstanceUnitsboundaryConditionconstantinitialAmountinitialConcentrationconversionFactorunitssubstanceUnitsderivedUnitssbocvterm
e__gal meta_e__gal + + + + D-galactoseext3.0molemole + + + + mole + + + m + 3 + + +
SBO:0000247
BQB_IS
gal; CHEBI:28061; gal
c__gal + + + + D-galactosecyto0.00012molemole + + + + mole + + + m + 3 + + +
SBO:0000247
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+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
Parameters [7]nameconstantvalueunitderived unitsbocvterm
x_cell + + + + cell diameter2.5e-05m + + m +
Vol_e + + + + external volume1e-12m3 + + + + m + 3 + +
A_m + + + + membrane area1.0m2 + + + + m + 2 + +
Vol_c + + + + + + + + x_cell + x_cell + x_cell + +m3 + + + + m + 3 + +
GLUT2_Vmax + + + + 1e-13mole_per_s + + + + mole + s + +
GLUT2_k_gal + + + + 1.0mM + + + + + + + + 10 + + + 3 + + + mole + + litre + +
GLUT2_keq + + + + 1.0dimensionlessNone
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InitialAssignments [3]nameassignmentderived unitssbocvterm
ext = + + Vol_e + + + + + m + 3 + +
pm = + + A_m + + + + + m + 2 + +
Vol_c = + + + + x_cell + x_cell + x_cell + + + + + + m + 3 + +
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Rules [1] assignmentnamederived unitssbocvterm
cyto + + + + = + + Vol_c + + + + + + m + 3 + +
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Reactions [1]nameequationmodifierskinetic lawderived unitssbocvterm
e__GLUT2_GAL + + + + galactose transport [e__]
+ 		⇆e__gal ⇆ c__gal + + + + + + + + GLUT2_Vmax + GLUT2_k_gal + + + + e__gal + + + c__gal + GLUT2_keq + + + + + + 1 + + + c__gal + GLUT2_k_gal + + + + e__gal + GLUT2_k_gal + + + + + + + + + + litre + mole + + + + + + m + 3 + + 0.001 + s + + +
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Created with sbmlutils

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