Dockerfile.repo

FROM quay.io/centos/centos:stream9

# R-Java
ENV JAVA_VERSION 1.8.0
ENV JAVA_HOME /usr/lib/jvm/java
RUN echo "$JAVA_HOME/jre/lib/$(arch)/server/" > /etc/ld.so.conf.d/rApache_rJava.conf && \
    export LD_LIBRARY_PATH=$JAVA_HOME/jre/lib/$(arch):$JAVA_HOME/jre/lib/$(arch)/server/ && \
    /sbin/ldconfig

RUN \
  echo "fastestmirror=1" >> /etc/dnf/dnf.conf && \
  dnf update -y && \
  dnf upgrade -y && \
  dnf install -y epel-release && \
  dnf config-manager --set-enabled crb && \
  dnf module enable -y postgresql:15 && \
  dnf install postgresql libpq libpq-devel -y && \
  dnf install -y rpm-build which make wget tar httpd-devel libapreq2-devel libcurl-devel openssl-devel libpng-devel java-1.8.0-openjdk java-1.8.0-openjdk-devel curl-devel libxml2-devel llvm-devel llvm-toolset sudo cmake initscripts && \
  dnf builddep -y R-devel && \
  dnf install -y MTA mod_ssl /usr/sbin/semanage && \
  dnf clean all

ENV R_VERSION 4.4.0
RUN curl -O https://cran.rstudio.com/src/base/R-4/R-${R_VERSION}.tar.gz && \
    tar -xzvf R-${R_VERSION}.tar.gz && \
    cd R-${R_VERSION} && \
    ./configure \
        --prefix=/opt/R/${R_VERSION} \
        --enable-memory-profiling \
        --enable-R-shlib \
        --with-blas \
        --with-lapack && \
    make && \
    make install

RUN ln -s /opt/R/${R_VERSION}/bin/R /usr/local/bin/R
RUN ln -s /opt/R/${R_VERSION}/bin/Rscript /usr/local/bin/Rscript

RUN R CMD javareconf

RUN \
  mkdir -p ~/rpmbuild/SOURCES && \
  mkdir -p ~/rpmbuild/SPECS

ENV RAPACHE_VERSION master
RUN \
  cd ~ && \
  wget https://github.com/jeffreyhorner/rapache/archive/$RAPACHE_VERSION.tar.gz -O rapache-$RAPACHE_VERSION.tar.gz && \
  tar xzvf rapache-$RAPACHE_VERSION.tar.gz && \
  cd rapache-$RAPACHE_VERSION && \
  ./configure \
    --with-R=/usr/local/bin/R\
    --with-apreq2-config=/usr/bin/apreq2-config && \
  make && \
  make install

RUN wget https://github.com/stevengj/nlopt/archive/v2.7.1.tar.gz && \
    tar -xzvf v2.7.1.tar.gz && \
    cd nlopt-2.7.1 && \
    cmake . && make && sudo make install
ENV LD_LIBRARY_PATH /nlopt-2.7.1:${LD_LIBRARY_PATH}
# Run ldconfig to update the shared library cache
RUN ldconfig

RUN	useradd -u 1000 -ms /bin/bash runner
ENV ACAS_HOME /home/runner/build
RUN echo $ACAS_HOME && mkdir $ACAS_HOME

WORKDIR $ACAS_HOME

ENV R_LIBS $ACAS_HOME/r_libs
RUN mkdir $ACAS_HOME/r_libs

COPY	DESCRIPTION $ACAS_HOME
COPY	R/installation.R $ACAS_HOME
RUN chown -R runner:runner $ACAS_HOME

USER runner
RUN  Rscript -e "source('installation.R');installDeps(sections = c('Imports', 'Suggests'));"

CMD ["bin/acas.sh", "run", "rservices"]