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environment.yml
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name: ntds_2019
channels:
- dglteam
- pytorch
- conda-forge
- defaults
dependencies:
# Created by running the following commands on Linux, macOS and Windows, then taking the common subset of dependencies.
# conda create -n ntds_2019 python=3.7 jupyterlab git numpy scipy matplotlib-base pandas networkx pygsp scikit-learn pytorch cpuonly dgl requests -c dglteam -c pytorch -c conda-forge -c defaults --override-channels
# conda env export --no-builds -n ntds_2019 > environment_linux.yml
- asn1crypto=1.2.0
- attrs=19.1.0
- backcall=0.1.0
- bleach=3.1.0
- ca-certificates=2019.9.11
- cffi=1.12.3
- chardet=3.0.4
- cpuonly=1.0
- cryptography=2.7
- cycler=0.10.0
- decorator=4.4.0
- defusedxml=0.5.0
- dgl=0.3.1
- entrypoints=0.3
- freetype=2.10.0
- git=2.23.0
- idna=2.8
- intel-openmp=2019.4
- ipykernel=5.1.2
- ipython=7.8.0
- ipython_genutils=0.2.0
- jedi=0.15.1
- jinja2=2.10.1
- joblib=0.13.2
- json5=0.8.5
- jsonschema=3.0.2
- jupyter_client=5.3.1
- jupyter_core=4.4.0
- jupyterlab=1.1.3
- jupyterlab_server=1.0.6
- kiwisolver=1.1.0
- libblas=3.8.0
- libcblas=3.8.0
- liblapack=3.8.0
- libpng=1.6.37
- libsodium=1.0.17
- markupsafe=1.1.1
- matplotlib-base=3.1.1
- mistune=0.8.4
- mkl=2019.4
- nbconvert=5.6.0
- nbformat=4.4.0
- networkx=2.3
- ninja=1.9.0
- notebook=6.0.1
- numpy=1.15.4
- openssl=1.1.1c
- pandas=0.25.1
- pandoc=2.7.3
- pandocfilters=1.4.2
- parso=0.5.1
- pickleshare=0.7.5
- pip=19.2.3
- prometheus_client=0.7.1
- prompt_toolkit=2.0.9
- pycparser=2.19
- pygments=2.4.2
- pygsp=0.5.1
- pyopenssl=19.0.0
- pyparsing=2.4.2
- pyrsistent=0.15.4
- pysocks=1.7.1
- python=3.7.3
- python-dateutil=2.8.0
- pytorch=1.2.0
- pytz=2019.2
- pyzmq=18.1.0
- requests=2.22.0
- scikit-learn=0.21.3
- scipy=1.3.1
- send2trash=1.5.0
- setuptools=41.2.0
- six=1.12.0
- sqlite=3.29.0
- terminado=0.8.2
- testpath=0.4.2
- tornado=6.0.3
- traitlets=4.3.2
- urllib3=1.25.6
- wcwidth=0.1.7
- webencodings=0.5.1
- wheel=0.33.6
- zeromq=4.3.2
- zlib=1.2.11
# PyTorch Geometric. Not easy to install due to compilation.
# conda activate ntds_2019
# pip install requests torch-scatter torch-sparse torch-cluster torch-spline-conv torch-geometric
# - pip:
# - chardet==3.0.4
# - googledrivedownloader==0.4
# - h5py==2.10.0
# - idna==2.8
# - isodate==0.6.0
# - plyfile==0.7
# - rdflib==4.2.2
# - requests==2.22.0
# - torch-cluster==1.4.4
# - torch-geometric==1.3.1
# - torch-scatter==1.3.1
# - torch-sparse==0.4.0
# - torch-spline-conv==1.1.0
# - urllib3==1.25.3