Version bump

DESCRIPTION

@@ -54,7 +54,7 @@ Suggests:
     nloptr,
     progressr,
     rmarkdown,
-    testthat
+    testthat (>= 3.0.0)
 VignetteBuilder:
     knitr
 Config/testthat/edition: 3

NEWS.md

@@ -3,6 +3,7 @@
 * Improved `TerminatorPerfRearched` documentation.
 * Added `check_values` flag in `OptimInstance`, `OptimInstanceSingleCrit`, 
   `OptimInstanceMultiCrit`, `ObjectiveRFun` and `ObjectiveRFunDt`.
+* `Archive$data` is a public field now.
 * Renamed `m` parameter to `batch` in `Archive$best()`.
 * `ArchiveBest` stores no data but records the best scoring evaluation.
 * Reduced runtime if `ObjectiveRFunDt` and a domain without trafo is used.

revdep/README.md

@@ -0,0 +1,43 @@
+# Platform
+
+|field    |value                        |
+|:--------|:----------------------------|
+|version  |R version 4.0.3 (2020-10-10) |
+|os       |Ubuntu 20.04.1 LTS           |
+|system   |x86_64, linux-gnu            |
+|ui       |X11                          |
+|language |en                           |
+|collate  |en_US.UTF-8                  |
+|ctype    |en_US.UTF-8                  |
+|tz       |Europe/Berlin                |
+|date     |2021-01-23                   |
+
+# Dependencies
+
+|package    |old    |new    |Δ  |
+|:----------|:------|:------|:--|
+|bbotk      |0.2.2  |0.3.0  |*  |
+|backports  |1.2.1  |1.2.1  |   |
+|checkmate  |2.0.0  |2.0.0  |   |
+|data.table |1.13.6 |1.13.6 |   |
+|lgr        |0.4.2  |0.4.2  |   |
+|mlr3misc   |0.7.0  |0.7.0  |   |
+|paradox    |0.7.0  |0.7.0  |   |
+|R6         |2.5.0  |2.5.0  |   |
+
+# Revdeps
+
+## Failed to check (2)
+
+|package          |version |error |warning |note |
+|:----------------|:-------|:-----|:-------|:----|
+|mlr3pipelines    |?       |      |        |     |
+|mlr3spatiotempcv |?       |      |        |     |
+
+## New problems (2)
+
+|package                                |version |error  |warning |note |
+|:--------------------------------------|:-------|:------|:-------|:----|
+|[mlr3fselect](problems.md#mlr3fselect) |0.4.1   |__+2__ |        |     |
+|[mlr3tuning](problems.md#mlr3tuning)   |0.5.0   |__+2__ |        |     |
+

revdep/checks/libraries.csv

@@ -0,0 +1,9 @@
+package,old,new,delta
+bbotk,0.2.2,0.3.0,*
+backports,1.2.1,1.2.1,
+checkmate,2.0.0,2.0.0,
+data.table,1.13.6,1.13.6,
+lgr,0.4.2,0.4.2,
+mlr3misc,0.7.0,0.7.0,
+paradox,0.7.0,0.7.0,
+R6,2.5.0,2.5.0,

revdep/checks/mlr3fselect/new/libraries.txt

@@ -0,0 +1,65 @@
+Library: /home/marc/Repository/bbotk/revdep/library/bbotk/new
+backports  (1.2.1)
+bbotk      (0.3.0)
+checkmate  (2.0.0)
+data.table (1.13.6)
+lgr        (0.4.2)
+mlr3misc   (0.7.0)
+paradox    (0.7.0)
+R6         (2.5.0)
+
+Library: /home/marc/Repository/bbotk/revdep/library/mlr3fselect
+assertthat    (0.2.1)
+backports     (1.2.1)
+brio          (1.1.1)
+callr         (3.5.1)
+checkmate     (2.0.0)
+cli           (2.2.0)
+codetools     (0.2-18)
+crayon        (1.3.4)
+data.table    (1.13.6)
+desc          (1.2.0)
+diffobj       (0.3.3)
+digest        (0.6.27)
+ellipsis      (0.3.1)
+evaluate      (0.14)
+fansi         (0.4.2)
+future        (1.21.0)
+future.apply  (1.7.0)
+genalg        (0.2.0)
+globals       (0.14.0)
+glue          (1.4.2)
+jsonlite      (1.7.2)
+lgr           (0.4.2)
+lifecycle     (0.2.0)
+listenv       (0.8.0)
+magrittr      (2.0.1)
+mlbench       (2.1-1)
+mlr3          (0.10.0)
+mlr3measures  (0.3.1)
+mlr3misc      (0.7.0)
+mlr3pipelines (0.3.2)
+paradox       (0.7.0)
+parallelly    (1.23.0)
+pillar        (1.4.7)
+pkgbuild      (1.2.0)
+pkgconfig     (2.0.3)
+pkgload       (1.1.0)
+praise        (1.0.0)
+prettyunits   (1.1.1)
+processx      (3.4.5)
+PRROC         (1.3.1)
+ps            (1.5.0)
+R6            (2.5.0)
+rematch2      (2.1.2)
+rlang         (0.4.10)
+rpart         (4.1-15)
+rprojroot     (2.0.2)
+rstudioapi    (0.13)
+testthat      (3.0.1)
+tibble        (3.0.5)
+utf8          (1.1.4)
+uuid          (0.1-4)
+vctrs         (0.3.6)
+waldo         (0.2.3)
+withr         (2.4.0)

revdep/checks/mlr3fselect/new/mlr3fselect.Rcheck/00check.log

@@ -0,0 +1,94 @@
+* using log directory ‘/home/marc/Repository/bbotk/revdep/checks/mlr3fselect/new/mlr3fselect.Rcheck’
+* using R version 4.0.3 (2020-10-10)
+* using platform: x86_64-pc-linux-gnu (64-bit)
+* using session charset: UTF-8
+* using options ‘--no-manual --no-build-vignettes’
+* checking for file ‘mlr3fselect/DESCRIPTION’ ... OK
+* this is package ‘mlr3fselect’ version ‘0.4.1’
+* package encoding: UTF-8
+* checking package namespace information ... OK
+* checking package dependencies ... OK
+* checking if this is a source package ... OK
+* checking if there is a namespace ... OK
+* checking for executable files ... OK
+* checking for hidden files and directories ... OK
+* checking for portable file names ... OK
+* checking for sufficient/correct file permissions ... OK
+* checking whether package ‘mlr3fselect’ can be installed ... OK
+* checking installed package size ... OK
+* checking package directory ... OK
+* checking DESCRIPTION meta-information ... OK
+* checking top-level files ... OK
+* checking for left-over files ... OK
+* checking index information ... OK
+* checking package subdirectories ... OK
+* checking R files for non-ASCII characters ... OK
+* checking R files for syntax errors ... OK
+* checking whether the package can be loaded ... OK
+* checking whether the package can be loaded with stated dependencies ... OK
+* checking whether the package can be unloaded cleanly ... OK
+* checking whether the namespace can be loaded with stated dependencies ... OK
+* checking whether the namespace can be unloaded cleanly ... OK
+* checking loading without being on the library search path ... OK
+* checking dependencies in R code ... OK
+* checking S3 generic/method consistency ... OK
+* checking replacement functions ... OK
+* checking foreign function calls ... OK
+* checking R code for possible problems ... OK
+* checking Rd files ... OK
+* checking Rd metadata ... OK
+* checking Rd cross-references ... OK
+* checking for missing documentation entries ... OK
+* checking for code/documentation mismatches ... OK
+* checking Rd \usage sections ... OK
+* checking Rd contents ... OK
+* checking for unstated dependencies in examples ... OK
+* checking examples ... ERROR
+Running examples in ‘mlr3fselect-Ex.R’ failed
+The error most likely occurred in:
+
+> ### Name: AutoFSelector
+> ### Title: AutoFSelector
+> ### Aliases: AutoFSelector
+> 
+> ### ** Examples
+> 
+> library(mlr3)
+> 
+> task = tsk("iris")
+> learner = lrn("classif.rpart")
+> resampling = rsmp("holdout")
+> measure = msr("classif.ce")
+> 
+> terminator = trm("evals", n_evals = 3)
+> fselector = fs("exhaustive_search")
+> afs = AutoFSelector$new(learner, resampling, measure, terminator, fselector,
++   store_fselect_instance = TRUE)
+> 
+> afs$train(task)
+Error in private$.objective_multiplicator <- ifelse(self$objective$codomain$tags ==  : 
+  cannot add bindings to a locked environment
+Calls: <Anonymous> ... initialize -> .__FSelectInstanceSingleCrit__initialize
+Execution halted
+* checking for unstated dependencies in ‘tests’ ... OK
+* checking tests ... ERROR
+  Running ‘testthat.R’
+Running the tests in ‘tests/testthat.R’ failed.
+Last 13 lines of output:
+   2.   └─FSelectInstanceSingleCrit$new(...) helper.R:60:2
+   3.     └─mlr3fselect:::initialize(...)
+   4.       └─mlr3fselect:::.__FSelectInstanceSingleCrit__initialize(...)
+  ── Error (test_FSelectorRandomSearch.R:13:3): FSelectorRandomSearch works with multi-crit ──
+  Error: cannot add bindings to a locked environment
+  Backtrace:
+      █
+   1. └─mlr3fselect:::test_fselector_2D(...) test_FSelectorRandomSearch.R:13:2
+   2.   └─FSelectInstanceMultiCrit$new(...) helper.R:109:2
+   3.     └─mlr3fselect:::initialize(...)
+   4.       └─mlr3fselect:::.__FSelectInstanceMultiCrit__initialize(...)
+
+  [ FAIL 16 | WARN 0 | SKIP 8 | PASS 17 ]
+  Error: Test failures
+  Execution halted
+* DONE
+Status: 2 ERRORs

revdep/checks/mlr3fselect/new/mlr3fselect.Rcheck/00install.out

@@ -0,0 +1,14 @@
+* installing *source* package ‘mlr3fselect’ ...
+** package ‘mlr3fselect’ successfully unpacked and MD5 sums checked
+** using staged installation
+** R
+** inst
+** byte-compile and prepare package for lazy loading
+** help
+*** installing help indices
+*** copying figures
+** building package indices
+** testing if installed package can be loaded from temporary location
+** testing if installed package can be loaded from final location
+** testing if installed package keeps a record of temporary installation path
+* DONE (mlr3fselect)

revdep/checks/mlr3fselect/new/mlr3fselect.Rcheck/mlr3fselect-Ex.Rout

@@ -0,0 +1,55 @@
+
+R version 4.0.3 (2020-10-10) -- "Bunny-Wunnies Freak Out"
+Copyright (C) 2020 The R Foundation for Statistical Computing
+Platform: x86_64-pc-linux-gnu (64-bit)
+
+R is free software and comes with ABSOLUTELY NO WARRANTY.
+You are welcome to redistribute it under certain conditions.
+Type 'license()' or 'licence()' for distribution details.
+
+  Natural language support but running in an English locale
+
+R is a collaborative project with many contributors.
+Type 'contributors()' for more information and
+'citation()' on how to cite R or R packages in publications.
+
+Type 'demo()' for some demos, 'help()' for on-line help, or
+'help.start()' for an HTML browser interface to help.
+Type 'q()' to quit R.
+
+> pkgname <- "mlr3fselect"
+> source(file.path(R.home("share"), "R", "examples-header.R"))
+> options(warn = 1)
+> library('mlr3fselect')
+> 
+> base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
+> base::assign(".old_wd", base::getwd(), pos = 'CheckExEnv')
+> cleanEx()
+> nameEx("AutoFSelector")
+> ### * AutoFSelector
+> 
+> flush(stderr()); flush(stdout())
+> 
+> ### Name: AutoFSelector
+> ### Title: AutoFSelector
+> ### Aliases: AutoFSelector
+> 
+> ### ** Examples
+> 
+> library(mlr3)
+> 
+> task = tsk("iris")
+> learner = lrn("classif.rpart")
+> resampling = rsmp("holdout")
+> measure = msr("classif.ce")
+> 
+> terminator = trm("evals", n_evals = 3)
+> fselector = fs("exhaustive_search")
+> afs = AutoFSelector$new(learner, resampling, measure, terminator, fselector,
++   store_fselect_instance = TRUE)
+> 
+> afs$train(task)
+Error in private$.objective_multiplicator <- ifelse(self$objective$codomain$tags ==  : 
+  cannot add bindings to a locked environment
+Calls: <Anonymous> ... initialize -> .__FSelectInstanceSingleCrit__initialize
+Execution halted

revdep/checks/mlr3fselect/new/mlr3fselect.Rcheck/tests/startup.Rs

@@ -0,0 +1,4 @@
+## A custom startup file for tests
+## Run as if a system Rprofile, so no packages, no assignments
+options(useFancyQuotes = FALSE)
+

revdep/checks/mlr3fselect/new/mlr3fselect.Rcheck/tests/testthat.R

@@ -0,0 +1,6 @@
+library(testthat)
+library(mlr3)
+library(mlr3fselect)
+library(checkmate)
+
+test_check("mlr3fselect")