From 1f4f1ef603f788cbf81ef401711768d14913e95a Mon Sep 17 00:00:00 2001 From: HDash <16350928+HDash@users.noreply.github.com> Date: Fri, 18 Oct 2024 14:21:39 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20neurogen?= =?UTF-8?q?omics/EpiCompare@c2719d6dba5a409c2b12f69a6bd528a8e0c2d558=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- 404.html | 18 +- articles/EpiCompare.html | 352 +++++++++++----------- articles/docker.html | 328 ++++++++++---------- articles/example_report.html | 56 ++-- articles/index.html | 18 +- authors.html | 34 ++- index.html | 56 ++-- news/index.html | 33 +- pkgdown.yml | 7 +- reference/CnR_H3K27ac.html | 24 +- reference/CnR_H3K27ac_picard.html | 34 +-- reference/CnT_H3K27ac.html | 26 +- reference/CnT_H3K27ac_picard.html | 34 +-- reference/EpiCompare.html | 110 +++---- reference/as_interactive.html | 42 ++- reference/bpplapply.html | 46 +-- reference/checkCache.html | 30 +- reference/check_cell_lines.html | 30 +- reference/check_genome_build.html | 34 +-- reference/check_grlist_cols.html | 34 +-- reference/check_list_names.html | 30 +- reference/check_workers.html | 30 +- reference/clean_granges.html | 30 +- reference/compute_consensus_peaks.html | 60 ++-- reference/compute_corr.html | 84 +++--- reference/download_button.html | 48 +-- reference/encode_H3K27ac.html | 22 +- reference/fig_length.html | 32 +- reference/fragment_info.html | 28 +- reference/gather_files.html | 58 ++-- reference/gather_files_names.html | 34 +-- reference/get_bpparam.html | 46 +-- reference/get_chromHMM_annotation.html | 38 +-- reference/group_files.html | 30 +- reference/hg19_blacklist.html | 22 +- reference/hg38_blacklist.html | 30 +- reference/index.html | 20 +- reference/is_granges.html | 28 +- reference/liftover_grlist.html | 42 +-- reference/message_parallel.html | 24 +- reference/messager.html | 40 +-- reference/mm10_blacklist.html | 30 +- reference/mm9_blacklist.html | 28 +- reference/overlap_heatmap.html | 38 +-- reference/overlap_percent.html | 40 +-- reference/overlap_stat_plot.html | 52 ++-- reference/overlap_upset_plot.html | 36 +-- reference/peak_info.html | 30 +- reference/plot_ChIPseeker_annotation.html | 38 +-- reference/plot_chromHMM.html | 38 +-- reference/plot_corr-1.png | Bin 58922 -> 58959 bytes reference/plot_corr.html | 92 +++--- reference/plot_enrichment.html | 44 +-- reference/plot_precision_recall-1.png | Bin 93418 -> 92833 bytes reference/plot_precision_recall-2.png | Bin 105001 -> 105060 bytes reference/plot_precision_recall.html | 114 +++---- reference/precision_recall.html | 80 ++--- reference/precision_recall_matrix.html | 34 +-- reference/predict_precision_recall.html | 42 +-- reference/predict_values.html | 36 +-- reference/prepare_blacklist.html | 34 +-- reference/prepare_genome_builds.html | 34 +-- reference/prepare_peaklist.html | 32 +- reference/prepare_reference.html | 40 +-- reference/read_bowtie.html | 32 +- reference/read_peaks.html | 34 +-- reference/rebin_peaks.html | 80 ++--- reference/remove_nonstandard_chrom.html | 36 +-- reference/report_command.html | 37 ++- reference/report_header.html | 28 +- reference/save_output.html | 40 +-- reference/set_min_max.html | 34 +-- reference/stopper.html | 36 +-- reference/tidy_chromosomes.html | 224 ++++++++++++++ reference/tidy_peakfile.html | 30 +- reference/translate_genome.html | 34 +-- reference/tss_plot.html | 48 +-- reference/width_boxplot.html | 30 +- reference/write_example_peaks.html | 36 +-- sitemap.xml | 301 +++++------------- 80 files changed, 2082 insertions(+), 2012 deletions(-) create mode 100644 reference/tidy_chromosomes.html diff --git a/404.html b/404.html index 4cfd25d..f27a1c2 100644 --- a/404.html +++ b/404.html @@ -18,7 +18,7 @@
- +