From 53ac16f2ea077ca2bee39edf4ca3835d0a42b225 Mon Sep 17 00:00:00 2001 From: HDash <16350928+HDash@users.noreply.github.com> Date: Wed, 6 Nov 2024 16:04:42 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20neurogen?= =?UTF-8?q?omics/MotifPeeker@bfa25148c569b01934151159d813abcae6ee2ecf=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- LICENSE.html | 2 +- articles/MotifPeeker.html | 6 +++--- articles/docker.html | 2 +- articles/examples.html | 2 +- articles/troubleshooting.html | 2 +- authors.html | 2 +- news/index.html | 2 +- reference/CTCF_ChIP_peaks.html | 2 +- reference/CTCF_TIP_peaks.html | 2 +- reference/MotifPeeker.html | 4 ++-- reference/bpapply.html | 2 +- reference/calc_frip.html | 2 +- reference/check_ENCODE.html | 4 ++-- reference/check_JASPAR.html | 4 ++-- reference/check_dep.html | 2 +- reference/check_duplicates.html | 2 +- reference/check_genome_build.html | 2 +- reference/check_input.html | 2 +- reference/confirm_meme_install.html | 2 +- reference/denovo_motifs.html | 2 +- reference/download_button.html | 2 +- reference/dt_enrichment_individual.html | 2 +- reference/filter_repeats.html | 2 +- reference/find_motifs.html | 4 ++-- reference/format_exptype.html | 2 +- reference/get_JASPARCORE.html | 4 ++-- reference/get_df_distances.html | 2 +- reference/get_df_enrichment.html | 2 +- reference/get_download_buttons.html | 2 +- reference/link_JASPAR.html | 2 +- reference/markov_background_model.html | 2 +- reference/messager.html | 2 +- reference/motif_MA1102.3.html | 2 +- reference/motif_MA1930.2.html | 2 +- reference/motif_enrichment.html | 2 +- reference/motif_similarity.html | 2 +- reference/normalise_paths.html | 2 +- reference/pipe.html | 2 +- reference/plot_enrichment_individual.html | 2 +- reference/plot_enrichment_overall.html | 2 +- reference/plot_motif_comparison.html | 2 +- reference/pretty_number.html | 2 +- reference/print_DT.html | 2 +- reference/print_denovo_sections.html | 2 +- reference/print_labels.html | 2 +- reference/random_string.html | 2 +- reference/read_motif_file.html | 2 +- reference/read_peak_file.html | 2 +- reference/read_peak_file_macs.html | 2 +- reference/read_peak_file_seacr.html | 2 +- reference/report_command.html | 2 +- reference/report_header.html | 2 +- reference/save_peak_file.html | 4 ++-- reference/segregate_seqs.html | 2 +- reference/summit_to_motif.html | 2 +- reference/to_plotly.html | 4 ++-- reference/trim_seqs.html | 2 +- reference/use_cache.html | 2 +- search.json | 2 +- 59 files changed, 68 insertions(+), 68 deletions(-) diff --git a/LICENSE.html b/LICENSE.html index 2a97fc0..b618429 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -36,7 +36,7 @@

GNU General Public License

- Source: LICENSE.md + Source: LICENSE.md
diff --git a/articles/MotifPeeker.html b/articles/MotifPeeker.html index 99321ab..ca19c8a 100644 --- a/articles/MotifPeeker.html +++ b/articles/MotifPeeker.html @@ -68,7 +68,7 @@

Get started

- Source: vignettes/MotifPeeker.Rmd + Source: vignettes/MotifPeeker.Rmd
MotifPeeker.Rmd
@@ -289,9 +289,9 @@

Run MotifPeeker} 
## Starting run with 1 cores.
## Script run successfully. 
-## Output saved at: /tmp/RtmpBSF8Mv/MotifPeeker_20241106_160256 
+## Output saved at: /tmp/RtmpSFhUpR/MotifPeeker_20241106_160325 
 ## Time taken: 1.03 mins.
-
## [1] "/tmp/RtmpBSF8Mv/MotifPeeker_20241106_160256"
+
## [1] "/tmp/RtmpSFhUpR/MotifPeeker_20241106_160325"

Required Inputs

diff --git a/articles/docker.html b/articles/docker.html index 02d2ba6..30f09f2 100644 --- a/articles/docker.html +++ b/articles/docker.html @@ -68,7 +68,7 @@

Docker/Singularity Containers

- Source: vignettes/articles/docker.Rmd + Source: vignettes/articles/docker.Rmd
docker.Rmd
diff --git a/articles/examples.html b/articles/examples.html index 8219d06..c4d15c7 100644 --- a/articles/examples.html +++ b/articles/examples.html @@ -68,7 +68,7 @@

Example Reports

- Source: vignettes/articles/examples.Rmd + Source: vignettes/articles/examples.Rmd
examples.Rmd
diff --git a/articles/troubleshooting.html b/articles/troubleshooting.html index 542409a..47c29fe 100644 --- a/articles/troubleshooting.html +++ b/articles/troubleshooting.html @@ -68,7 +68,7 @@

Troubleshooting

- Source: vignettes/troubleshooting.Rmd + Source: vignettes/troubleshooting.Rmd
troubleshooting.Rmd
diff --git a/authors.html b/authors.html index 56dcfa4..2046e66 100644 --- a/authors.html +++ b/authors.html @@ -57,7 +57,7 @@

Authors

Citation

-

Source: DESCRIPTION

+

Source: DESCRIPTION

Dash H, Roberts T, Skene N (2024). MotifPeeker: Benchmarking Epigenomic Profiling Methods Using Motif Enrichment. diff --git a/news/index.html b/news/index.html index 56bce38..2dbd7f5 100644 --- a/news/index.html +++ b/news/index.html @@ -36,7 +36,7 @@

Changelog

- Source: NEWS.md + Source: NEWS.md
diff --git a/reference/CTCF_ChIP_peaks.html b/reference/CTCF_ChIP_peaks.html index 9cd7817..9403429 100644 --- a/reference/CTCF_ChIP_peaks.html +++ b/reference/CTCF_ChIP_peaks.html @@ -38,7 +38,7 @@

Example ChIP-seq peak file

- Source: R/data.R + Source: R/data.R
CTCF_ChIP_peaks.Rd
diff --git a/reference/CTCF_TIP_peaks.html b/reference/CTCF_TIP_peaks.html index f252ac4..57301ac 100644 --- a/reference/CTCF_TIP_peaks.html +++ b/reference/CTCF_TIP_peaks.html @@ -44,7 +44,7 @@

Example TIP-seq peak file

- Source: R/data.R + Source: R/data.R
CTCF_TIP_peaks.Rd
diff --git a/reference/MotifPeeker.html b/reference/MotifPeeker.html index 340a5ed..4423dca 100644 --- a/reference/MotifPeeker.html +++ b/reference/MotifPeeker.html @@ -44,7 +44,7 @@

Benchmark epigenomic profiling methods using motif enrichment

- Source: R/MotifPeeker.R + Source: R/MotifPeeker.R
MotifPeeker.Rd
@@ -331,7 +331,7 @@

Examples verbose = FALSE ) } -#> [1] "/tmp/RtmpMEwEpW/MotifPeeker_20241106_160142" +#> [1] "/tmp/Rtmp2pvpkl/MotifPeeker_20241106_160210"

diff --git a/reference/bpapply.html b/reference/bpapply.html index ce55987..610c006 100644 --- a/reference/bpapply.html +++ b/reference/bpapply.html @@ -38,7 +38,7 @@

Use BiocParallel functions with appropriate parameters

- Source: R/bpapply.R + Source: R/bpapply.R
bpapply.Rd
diff --git a/reference/calc_frip.html b/reference/calc_frip.html index c0f2488..c198ba2 100644 --- a/reference/calc_frip.html +++ b/reference/calc_frip.html @@ -38,7 +38,7 @@

Calculate FRiP score

- Source: R/calc_frip.R + Source: R/calc_frip.R
calc_frip.Rd
diff --git a/reference/check_ENCODE.html b/reference/check_ENCODE.html index f586c03..5202b80 100644 --- a/reference/check_ENCODE.html +++ b/reference/check_ENCODE.html @@ -38,7 +38,7 @@

Check for ENCODE input

- Source: R/check_ENCODE.R + Source: R/check_ENCODE.R
check_ENCODE.Rd
@@ -83,7 +83,7 @@

Examples check_ENCODE("ENCFF920TXI", expect_format = c("bed", "gz")) } #> BFC2 -#> "/github/home/.cache/R/BiocFileCache/117a115fc9b9_ENCFF920TXI.bed.gz" +#> "/github/home/.cache/R/BiocFileCache/11691e277d5b_ENCFF920TXI.bed.gz" diff --git a/reference/check_JASPAR.html b/reference/check_JASPAR.html index 69a5d38..96070f5 100644 --- a/reference/check_JASPAR.html +++ b/reference/check_JASPAR.html @@ -38,7 +38,7 @@

Check for JASPAR input

- Source: R/check_JASPAR.R + Source: R/check_JASPAR.R
check_JASPAR.Rd
@@ -74,7 +74,7 @@

Value

Examples

check_JASPAR("MA1930.2")
 #>                                                               BFC3 
-#> "/github/home/.cache/R/BiocFileCache/117a44aef202_MA1930.2.jaspar" 
+#> "/github/home/.cache/R/BiocFileCache/11692240d62a_MA1930.2.jaspar"
diff --git a/reference/check_dep.html b/reference/check_dep.html index 983d605..453723d 100644 --- a/reference/check_dep.html +++ b/reference/check_dep.html @@ -36,7 +36,7 @@

Check attached dependency

- Source: R/utilities.R + Source: R/utilities.R
check_dep.Rd
diff --git a/reference/check_duplicates.html b/reference/check_duplicates.html index ea7880f..1933a9c 100644 --- a/reference/check_duplicates.html +++ b/reference/check_duplicates.html @@ -36,7 +36,7 @@

Check for duplicates

- Source: R/utilities.R + Source: R/utilities.R
check_duplicates.Rd
diff --git a/reference/check_genome_build.html b/reference/check_genome_build.html index 7c84d62..1b6da44 100644 --- a/reference/check_genome_build.html +++ b/reference/check_genome_build.html @@ -38,7 +38,7 @@

Check genome build

- Source: R/check_genome_build.R + Source: R/check_genome_build.R
check_genome_build.Rd
diff --git a/reference/check_input.html b/reference/check_input.html index facb16d..7e4b4d3 100644 --- a/reference/check_input.html +++ b/reference/check_input.html @@ -36,7 +36,7 @@

Check for input validity and pass to appropriate function

- Source: R/check_input.R + Source: R/check_input.R
check_input.Rd
diff --git a/reference/confirm_meme_install.html b/reference/confirm_meme_install.html index b9d4e25..82cc65f 100644 --- a/reference/confirm_meme_install.html +++ b/reference/confirm_meme_install.html @@ -36,7 +36,7 @@

Stop if MEME suite is not installed

- Source: R/utilities.R + Source: R/utilities.R
confirm_meme_install.Rd
diff --git a/reference/denovo_motifs.html b/reference/denovo_motifs.html index 0247702..ed93f62 100644 --- a/reference/denovo_motifs.html +++ b/reference/denovo_motifs.html @@ -42,7 +42,7 @@

Find de-novo motifs in sequences

- Source: R/denovo_motifs.R + Source: R/denovo_motifs.R
denovo_motifs.Rd
diff --git a/reference/download_button.html b/reference/download_button.html index 37f07d1..ab76eb3 100644 --- a/reference/download_button.html +++ b/reference/download_button.html @@ -38,7 +38,7 @@

Create a download button

- Source: R/download_button.R + Source: R/download_button.R
download_button.Rd
diff --git a/reference/dt_enrichment_individual.html b/reference/dt_enrichment_individual.html index 52fd974..986eba4 100644 --- a/reference/dt_enrichment_individual.html +++ b/reference/dt_enrichment_individual.html @@ -38,7 +38,7 @@

Get datatable for motif-enrichment of individual experiments.

- Source: R/dt_enrichment_individual.R + Source: R/dt_enrichment_individual.R
dt_enrichment_individual.Rd
diff --git a/reference/filter_repeats.html b/reference/filter_repeats.html index 6cfa997..2f97571 100644 --- a/reference/filter_repeats.html +++ b/reference/filter_repeats.html @@ -40,7 +40,7 @@

Filter motifs with nucleotide repeats

- Source: R/filter_repeats.R + Source: R/filter_repeats.R
filter_repeats.Rd
diff --git a/reference/find_motifs.html b/reference/find_motifs.html index c6a50ad..ed20420 100644 --- a/reference/find_motifs.html +++ b/reference/find_motifs.html @@ -38,7 +38,7 @@

Find similar motifs

- Source: R/find_motifs.R + Source: R/find_motifs.R
find_motifs.Rd
@@ -150,7 +150,7 @@

Examples#> nsites pval type pseudocount bkg best_match_name best_match_altname #> 1 21 1 PCM 0 0.24, 0..... MA2125.1 Zfp809 #> best_db_name best_match_offset -#> 1 6aa180c1445_JASPAR2024_CORE_non-redundant_pfms_meme.txt 1 +#> 1 6aa1494d664_JASPAR2024_CORE_non-redundant_pfms_meme.txt 1 #> best_match_pval best_match_eval best_match_qval best_match_strand #> 1 3.6e-05 0.0845 0.169 + #> best_match_motif tomtom diff --git a/reference/format_exptype.html b/reference/format_exptype.html index 87e11ca..5dbcc71 100644 --- a/reference/format_exptype.html +++ b/reference/format_exptype.html @@ -36,7 +36,7 @@

Format exp_type

- Source: R/utilities.R + Source: R/utilities.R
format_exptype.Rd
diff --git a/reference/get_JASPARCORE.html b/reference/get_JASPARCORE.html index b71f4bb..99ffa07 100644 --- a/reference/get_JASPARCORE.html +++ b/reference/get_JASPARCORE.html @@ -38,7 +38,7 @@

Download JASPAR CORE database

- Source: R/get_JASPARCORE.R + Source: R/get_JASPARCORE.R
get_JASPARCORE.Rd
@@ -71,7 +71,7 @@

Value

Examples

get_JASPARCORE()
 #>                                                                                          BFC1 
-#> "/github/home/.cache/R/BiocFileCache/6aa180c1445_JASPAR2024_CORE_non-redundant_pfms_meme.txt" 
+#> "/github/home/.cache/R/BiocFileCache/6aa1494d664_JASPAR2024_CORE_non-redundant_pfms_meme.txt"
diff --git a/reference/get_df_distances.html b/reference/get_df_distances.html index df0182e..6602c6f 100644 --- a/reference/get_df_distances.html +++ b/reference/get_df_distances.html @@ -40,7 +40,7 @@

Get dataframe with motif-summit distances

- Source: R/get_df_distances.R + Source: R/get_df_distances.R
get_df_distances.Rd
diff --git a/reference/get_df_enrichment.html b/reference/get_df_enrichment.html index 9c1e084..b9430e0 100644 --- a/reference/get_df_enrichment.html +++ b/reference/get_df_enrichment.html @@ -42,7 +42,7 @@

Get dataframe with motif enrichment values

- Source: R/get_df_enrichment.R + Source: R/get_df_enrichment.R
get_df_enrichment.Rd
diff --git a/reference/get_download_buttons.html b/reference/get_download_buttons.html index 79b36ec..27fe2e1 100644 --- a/reference/get_download_buttons.html +++ b/reference/get_download_buttons.html @@ -36,7 +36,7 @@

Get download buttons for peak file, STREME and TOMOTM output

- Source: R/get_download_buttons.R + Source: R/get_download_buttons.R
get_download_buttons.Rd
diff --git a/reference/link_JASPAR.html b/reference/link_JASPAR.html index 79dd2c1..a612d04 100644 --- a/reference/link_JASPAR.html +++ b/reference/link_JASPAR.html @@ -36,7 +36,7 @@

Get JASPAR link for motifs

- Source: R/link_JASPAR.R + Source: R/link_JASPAR.R
link_JASPAR.Rd
diff --git a/reference/markov_background_model.html b/reference/markov_background_model.html index 9fc45a6..d6eed24 100644 --- a/reference/markov_background_model.html +++ b/reference/markov_background_model.html @@ -40,7 +40,7 @@

Generate a 0-order Markov background model

- Source: R/markov_background_model.R + Source: R/markov_background_model.R
markov_background_model.Rd
diff --git a/reference/messager.html b/reference/messager.html index 691db6a..f743e75 100644 --- a/reference/messager.html +++ b/reference/messager.html @@ -42,7 +42,7 @@

Print messages

- Source: R/utilities.R + Source: R/utilities.R
messager.Rd
diff --git a/reference/motif_MA1102.3.html b/reference/motif_MA1102.3.html index d45ce96..24937e3 100644 --- a/reference/motif_MA1102.3.html +++ b/reference/motif_MA1102.3.html @@ -40,7 +40,7 @@

Example CTCFL JASPAR motif file

- Source: R/data.R + Source: R/data.R
motif_MA1102.3.Rd
diff --git a/reference/motif_MA1930.2.html b/reference/motif_MA1930.2.html index 8247fbb..8e224b9 100644 --- a/reference/motif_MA1930.2.html +++ b/reference/motif_MA1930.2.html @@ -40,7 +40,7 @@

Example CTCF JASPAR motif file

- Source: R/data.R + Source: R/data.R
motif_MA1930.2.Rd
diff --git a/reference/motif_enrichment.html b/reference/motif_enrichment.html index cad419c..268f389 100644 --- a/reference/motif_enrichment.html +++ b/reference/motif_enrichment.html @@ -40,7 +40,7 @@

Calculate motif enrichment in a set of sequences

- Source: R/motif_enrichment.R + Source: R/motif_enrichment.R
motif_enrichment.Rd
diff --git a/reference/motif_similarity.html b/reference/motif_similarity.html index 5647178..698dbea 100644 --- a/reference/motif_similarity.html +++ b/reference/motif_similarity.html @@ -42,7 +42,7 @@

Compare motifs from segregated sequences

- Source: R/motif_similarity.R + Source: R/motif_similarity.R
motif_similarity.Rd
diff --git a/reference/normalise_paths.html b/reference/normalise_paths.html index 9adccf1..08dff19 100644 --- a/reference/normalise_paths.html +++ b/reference/normalise_paths.html @@ -36,7 +36,7 @@

Apply normalizePath to a list of paths

- Source: R/utilities.R + Source: R/utilities.R
normalise_paths.Rd
diff --git a/reference/pipe.html b/reference/pipe.html index 91777fa..dc91b5a 100644 --- a/reference/pipe.html +++ b/reference/pipe.html @@ -36,7 +36,7 @@

Pipe operator

- Source: R/utilities.R + Source: R/utilities.R
pipe.Rd
diff --git a/reference/plot_enrichment_individual.html b/reference/plot_enrichment_individual.html index 45dbecc..aacb2a7 100644 --- a/reference/plot_enrichment_individual.html +++ b/reference/plot_enrichment_individual.html @@ -40,7 +40,7 @@

Plot motif-enrichment for individual experiments

- Source: R/plot_enrichment_individual.R + Source: R/plot_enrichment_individual.R
plot_enrichment_individual.Rd
diff --git a/reference/plot_enrichment_overall.html b/reference/plot_enrichment_overall.html index 55eb126..a4bc843 100644 --- a/reference/plot_enrichment_overall.html +++ b/reference/plot_enrichment_overall.html @@ -40,7 +40,7 @@

Plot motif-enrichment for all experiments

- Source: R/plot_enrichment_overall.R + Source: R/plot_enrichment_overall.R
plot_enrichment_overall.Rd
diff --git a/reference/plot_motif_comparison.html b/reference/plot_motif_comparison.html index 16ba51b..92a7f15 100644 --- a/reference/plot_motif_comparison.html +++ b/reference/plot_motif_comparison.html @@ -36,7 +36,7 @@

Produce heat maps of motif similarity matrices

- Source: R/plot_motif_comparison.R + Source: R/plot_motif_comparison.R
plot_motif_comparison.Rd
diff --git a/reference/pretty_number.html b/reference/pretty_number.html index 981bd65..3a078b0 100644 --- a/reference/pretty_number.html +++ b/reference/pretty_number.html @@ -38,7 +38,7 @@

Convert numbers to more readable strings

- Source: R/utilities.R + Source: R/utilities.R
pretty_number.Rd
diff --git a/reference/print_DT.html b/reference/print_DT.html index 4314a8b..f9dca6c 100644 --- a/reference/print_DT.html +++ b/reference/print_DT.html @@ -36,7 +36,7 @@

Print DT table

- Source: R/print_DT.R + Source: R/print_DT.R
print_DT.Rd
diff --git a/reference/print_denovo_sections.html b/reference/print_denovo_sections.html index e0f0375..d44f7bf 100644 --- a/reference/print_denovo_sections.html +++ b/reference/print_denovo_sections.html @@ -38,7 +38,7 @@

Print denovo motif enrichment datatable and download buttons for related files.

- Source: R/print_denovo_sections.R + Source: R/print_denovo_sections.R
print_denovo_sections.Rd
diff --git a/reference/print_labels.html b/reference/print_labels.html index 8d5a395..e5eb765 100644 --- a/reference/print_labels.html +++ b/reference/print_labels.html @@ -36,7 +36,7 @@

Print the labels of the reference and comparison experiments

- Source: R/print_labels.R + Source: R/print_labels.R
print_labels.Rd
diff --git a/reference/random_string.html b/reference/random_string.html index e4967b2..febd637 100644 --- a/reference/random_string.html +++ b/reference/random_string.html @@ -36,7 +36,7 @@

Generate a random string

- Source: R/utilities.R + Source: R/utilities.R
random_string.Rd
diff --git a/reference/read_motif_file.html b/reference/read_motif_file.html index 4466cb7..2597960 100644 --- a/reference/read_motif_file.html +++ b/reference/read_motif_file.html @@ -40,7 +40,7 @@

Read a motif file

- Source: R/read_motif_file.R + Source: R/read_motif_file.R
read_motif_file.Rd
diff --git a/reference/read_peak_file.html b/reference/read_peak_file.html index c613d13..ed3d617 100644 --- a/reference/read_peak_file.html +++ b/reference/read_peak_file.html @@ -38,7 +38,7 @@

Read MACS2/3 narrowPeak or SEACR BED peak file

- Source: R/read_peak_file.R + Source: R/read_peak_file.R
read_peak_file.Rd
diff --git a/reference/read_peak_file_macs.html b/reference/read_peak_file_macs.html index 7bb2ad4..3cfb52c 100644 --- a/reference/read_peak_file_macs.html +++ b/reference/read_peak_file_macs.html @@ -38,7 +38,7 @@

Read MACS2/3 narrowPeak peak file

- Source: R/read_peak_file_macs.R + Source: R/read_peak_file_macs.R
read_peak_file_macs.Rd
diff --git a/reference/read_peak_file_seacr.html b/reference/read_peak_file_seacr.html index 9aa49d7..06cb7cd 100644 --- a/reference/read_peak_file_seacr.html +++ b/reference/read_peak_file_seacr.html @@ -38,7 +38,7 @@

Read SEACR BED peak file

- Source: R/read_peak_file_seacr.R + Source: R/read_peak_file_seacr.R
read_peak_file_seacr.Rd
diff --git a/reference/report_command.html b/reference/report_command.html index 0549917..e27e068 100644 --- a/reference/report_command.html +++ b/reference/report_command.html @@ -38,7 +38,7 @@

Report command

- Source: R/report_command.R + Source: R/report_command.R
report_command.Rd
diff --git a/reference/report_header.html b/reference/report_header.html index 3b65c0a..de82472 100644 --- a/reference/report_header.html +++ b/reference/report_header.html @@ -36,7 +36,7 @@

Report header

- Source: R/report_header.R + Source: R/report_header.R
report_header.Rd
diff --git a/reference/save_peak_file.html b/reference/save_peak_file.html index 768a0a7..26523a1 100644 --- a/reference/save_peak_file.html +++ b/reference/save_peak_file.html @@ -42,7 +42,7 @@

Minimally save a peak object to a file (BED4)

- Source: R/save_peak_file.R + Source: R/save_peak_file.R
save_peak_file.Rd
@@ -100,7 +100,7 @@

Examples out <- save_peak_file(CTCF_ChIP_peaks, save = TRUE, "test_peak_file.bed") print(out) -#> [1] "/tmp/RtmpMEwEpW/test_peak_file.bed" +#> [1] "/tmp/Rtmp2pvpkl/test_peak_file.bed" diff --git a/reference/segregate_seqs.html b/reference/segregate_seqs.html index c19ef59..9b077a3 100644 --- a/reference/segregate_seqs.html +++ b/reference/segregate_seqs.html @@ -42,7 +42,7 @@

Segregate input sequences into common and unique groups

- Source: R/segregate_seqs.R + Source: R/segregate_seqs.R
segregate_seqs.Rd
diff --git a/reference/summit_to_motif.html b/reference/summit_to_motif.html index db9931e..5198d9e 100644 --- a/reference/summit_to_motif.html +++ b/reference/summit_to_motif.html @@ -40,7 +40,7 @@

Calculate the distance between peak summits and motifs

- Source: R/summit_to_motif.R + Source: R/summit_to_motif.R
summit_to_motif.Rd
diff --git a/reference/to_plotly.html b/reference/to_plotly.html index 7675730..7e6511c 100644 --- a/reference/to_plotly.html +++ b/reference/to_plotly.html @@ -36,7 +36,7 @@

Convert ggplot2 objects to plotly

- Source: R/to_plotly.R + Source: R/to_plotly.R
to_plotly.Rd
@@ -109,7 +109,7 @@

Examplesp <- ggplot2::ggplot(x, ggplot2::aes(x = a, y = b)) + ggplot2::geom_point() MotifPeeker:::to_plotly(p, html_tags = FALSE)
- +