Fix missing meme_path and verbose argument

neurogenomics · Dec 2, 2024 · 54018c0 · 54018c0
1 parent fc5b8fc
commit 54018c0
Show file tree

Hide file tree

Showing 3 changed files with 21 additions and 2 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Type: Package
 Package: MotifPeeker
 Title: Benchmarking Epigenomic Profiling Methods Using Motif Enrichment
-Version: 0.99.11
+Version: 0.99.12
 Authors@R: c( 
     person(given = "Hiranyamaya",
            family = "Dash",
@@ -13,6 +13,11 @@ Authors@R: c(
            role = c("aut"),
            email = "tomroberts.work15@gmail.com",
            comment = c(ORCID = "0009-0006-6244-8670")),
+    person(given = "Maria",
+           family = "Weinert",
+           role = c("aut"),
+           email = "m.weinert13@imperial.ac.uk",
+           comment = c(ORCID = "0000-0001-6187-1000")),     
     person(given = "Nathan",
            family = "Skene",
            role = c("aut"),

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,15 @@
+# MotifPeeker 0.99.12
+
+## Bug Fixes
+* Supply `meme_path` and `verbose` to second `motif_enrichment` call in
+`get_df_enrichment`.
+
+## Miscellaneous
+* Update example reports.
+* Add new author.
+* Add BioConductor installation instructions to README.
+
+
 # MotifPeeker 0.99.11
 
 ## Miscellaneous

diff --git a/R/get_df_enrichment.R b/R/get_df_enrichment.R
@@ -147,7 +147,9 @@ get_df_enrichment <- function(result,
             res <- MotifPeeker::motif_enrichment(
                 peak, motif,
                 genome_build = genome_build,
-                out_dir = file.path(out_dir, "ame_segregated", i)
+                out_dir = file.path(out_dir, "ame_segregated", i),
+                meme_path = meme_path,
+                verbose = verbose
             )
             list(
                 exp_label = exp_label_combinations2[i],