From 798784a3acf385b5786ea903b16d1cda77746ae4 Mon Sep 17 00:00:00 2001 From: "Brian M. Schilder" <34280215+bschilder@users.noreply.github.com> Date: Fri, 9 Feb 2024 06:26:29 +0000 Subject: [PATCH] move experimental models report --- experimental_models.Rmd => reports/experimental_models.Rmd | 0 top_targets_CSL.tsv | 2 -- 2 files changed, 2 deletions(-) rename experimental_models.Rmd => reports/experimental_models.Rmd (100%) delete mode 100644 top_targets_CSL.tsv diff --git a/experimental_models.Rmd b/reports/experimental_models.Rmd similarity index 100% rename from experimental_models.Rmd rename to reports/experimental_models.Rmd diff --git a/top_targets_CSL.tsv b/top_targets_CSL.tsv deleted file mode 100644 index b696a44..0000000 --- a/top_targets_CSL.tsv +++ /dev/null @@ -1,2 +0,0 @@ -Area disease_id hpo_id disease_name ancestor ancestor_name hpo_name cl_id cl_name gene_symbol intellectual_disability death impaired_mobility physical_malformations blindness sensory_impairments immunodeficiency cancer reduced_fertility congenital_onset severity_score_gpt ctd.dh author_celltype.dh CellType.dh batch.dh annotLevel.dh p.dh fold_change.dh sd_from_mean.dh q.dh definition.dh info_content.dh AgeOfDeath_score_mean.dh AgeOfDeath_score_min.dh AgeOfDeath_score_max.dh AgeOfDeath_top.dh AgeOfDeath_earliest.dh AgeOfDeath_latest.dh ontLvl.dh onset.dh onset_names.dh onset_counts.dh onset_score_mean.dh onset_score_min.dh onset_score_max.dh onset_top.dh onset_earliest.dh onset_latest.dh disease_characteristic.dh tier.dh tier_auto.dh tier_merge.dh modifier_name.dh Severity_score.dh n_diseases.dh pheno_freq_name.dh pheno_freq_min.dh pheno_freq_max.dh pheno_freq_mean.dh ncbi_gene_id.dh seqnames.dh start.dh end.dh width.dh strand.dh gene_id.dh gene_name.dh gene_biotype.dh seq_coord_system.dh evidence_score_min.dh evidence_score_max.dh evidence_score_mean.dh specificity.dh specificity_quantile.x.dh mean_exp.dh mean_exp_quantile.dh gene_freq.dh gene_freq_name.dh gene_freq_min.dh gene_freq_max.dh gene_freq_mean.dh n_genes_hpo_id.dh n_genes_disease_id.dh n_genes_symptom.dh specificity_quantile.y.dh n_driver_genes_hpo_id.dh n_driver_genes_symptom.dh proportion_driver_genes_symptom.dh CellType_symptom.dh ctd.hcl author_celltype.hcl CellType.hcl batch.hcl annotLevel.hcl p.hcl fold_change.hcl sd_from_mean.hcl q.hcl definition.hcl info_content.hcl AgeOfDeath_score_mean.hcl AgeOfDeath_score_min.hcl AgeOfDeath_score_max.hcl AgeOfDeath_top.hcl AgeOfDeath_earliest.hcl AgeOfDeath_latest.hcl ontLvl.hcl onset.hcl onset_names.hcl onset_counts.hcl onset_score_mean.hcl onset_score_min.hcl onset_score_max.hcl onset_top.hcl onset_earliest.hcl onset_latest.hcl disease_characteristic.hcl tier.hcl tier_auto.hcl tier_merge.hcl modifier_name.hcl Severity_score.hcl n_diseases.hcl pheno_freq_name.hcl pheno_freq_min.hcl pheno_freq_max.hcl pheno_freq_mean.hcl ncbi_gene_id.hcl seqnames.hcl start.hcl end.hcl width.hcl strand.hcl gene_id.hcl gene_name.hcl gene_biotype.hcl seq_coord_system.hcl evidence_score_min.hcl evidence_score_max.hcl evidence_score_mean.hcl specificity.hcl specificity_quantile.x.hcl mean_exp.hcl mean_exp_quantile.hcl gene_freq.hcl gene_freq_name.hcl gene_freq_min.hcl gene_freq_max.hcl gene_freq_mean.hcl n_genes_hpo_id.hcl n_genes_disease_id.hcl n_genes_symptom.hcl specificity_quantile.y.hcl n_driver_genes_hpo_id.hcl n_driver_genes_symptom.hcl proportion_driver_genes_symptom.hcl CellType_symptom.hcl mean_fold_change Area.x Subarea.x Area.y Subarea.y Subarea -Hematology OMIM:175780 HP:0002140 Brain small vessel disease 1 with or without ocular anomalies HP:0000707 Abnormality of the nervous system Ischemic stroke CL:0000192 smooth muscle cell COL4A1 3 3 3 0 1 3 0 0 0 0 18.5714285714286 DescartesHuman Smooth_muscle_cells Smooth_muscle_cells subjob.HP0002140 2 0.00056 5.09369131299137 6.34517346421131 0.04312 Acute ischemic stroke (AIS) is defined by the sudden loss of blood flow to an area of the brain with the resulting loss of neurologic function. It is caused by thrombosis or embolism that occludes a cerebral vessel supplying a specific area of the brain. During a vessel occlusion, there is a core area where damage to the brain is irreversible and an area of penumbra where the brain has lost function owing to decreased blood flow but is not irreversibly injured. 8.69249013327323 9 3 3 30 1282 13 110801318 110959496 158179 - ENSG00000187498 COL4A1 protein_coding chromosome 4 6 5 0.111779816161602 40 1.25149782135076 40 38 1 1 40 14 1 1 Smooth_muscle_cells HumanCellLandscape Smooth_muscle_cell Fetus_Smooth_muscle_cell subjob.HP0002140 3 0 5.07122006987499 10.9837980473587 0 Acute ischemic stroke (AIS) is defined by the sudden loss of blood flow to an area of the brain with the resulting loss of neurologic function. It is caused by thrombosis or embolism that occludes a cerebral vessel supplying a specific area of the brain. During a vessel occlusion, there is a core area where damage to the brain is irreversible and an area of penumbra where the brain has lost function owing to decreased blood flow but is not irreversibly injured. 8.69249013327323 9 3 3 30 1282 13 110801318 110959496 158179 - ENSG00000187498 COL4A1 protein_coding chromosome 4 6 5 0.055422090448436 39 0.607219824259571 39 38 1 1 39 11 1 1 Fetus_Smooth_muscle_cell 5.08245569143318 Hematology Ischemic Stroke Ischemic Stroke