fix append name SRA-submit

nextgenusfs · Apr 12, 2017 · 98a5c63 · 98a5c63
1 parent 9e5dfab
commit 98a5c63
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/bin/amptk-fastq2sra.py b/bin/amptk-fastq2sra.py
@@ -334,7 +334,7 @@ def FindBarcode(Seq, BarcodeDict):
                 bc_name = file.split(".gz")[0]
                 barcode_seq = Barcodes.get(bc_name)
                 if args.append:
-                    finalname = name+'_'+append
+                    finalname = name+'_'+args.append
                     #also need to change the name for output files
                     newfile = file.replace(name, finalname)
                     os.rename(os.path.join(args.out, file), os.path.join(args.out, newfile))
@@ -365,7 +365,7 @@ def FindBarcode(Seq, BarcodeDict):
                     barcode_for = 'missing'
                     barcode_rev = 'missing'
                 if args.append:
-                    finalname = name+'_'+append
+                    finalname = name+'_'+args.append
                     newfile = file.replace(name, finalname)
                     newfile2 = file2.replace(name, finalname)
                     #also need to change the name for output files