You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hello! While running interproscan locally:
funannotate iprscan -i predictions/predict_results/Elsinoe_persea.proteins.fa
-m local -o out_iprscan/persea.XML
--iprscan_path /home/efrain.escudero/bin/miniforge3/envs/funannotate/bin/interproscan.sh -c 64
It writes an XML in the output directory, however, it's empty. Outside directory "predictions", a folder appears containing temporary files (proteins). Phobius and SignalP are installed and recognised.
Logfile:
Running InterProScan5 on 7917 proteins
Important: you need to manually configure your interproscan.properties file for embedded workers.
Will try to launch 64 interproscan processes, adjust -c,--cpus for your system
Progress: 8 complete, 0 failed, 0 remaining
Traceback (most recent call last):
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/site-packages/funannotate/aux_scripts/iprscan-local.py", line 409, in
shutil.rmtree(tmpdir)
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 734, in rmtree
_rmtree_safe_fd(fd, path, onerror)
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 667, in _rmtree_safe_fd
_rmtree_safe_fd(dirfd, fullname, onerror)
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 667, in _rmtree_safe_fd
_rmtree_safe_fd(dirfd, fullname, onerror)
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 673, in _rmtree_safe_fd
onerror(os.rmdir, fullname, sys.exc_info())
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 671, in _rmtree_safe_fd
os.rmdir(entry.name, dir_fd=topfd)
OSError: [Errno 39] Directory not empty: 'jobPanther'
Running in HPC with Red Hat Enterprise Linux 8.6
The text was updated successfully, but these errors were encountered:
Hello! While running interproscan locally:
funannotate iprscan -i predictions/predict_results/Elsinoe_persea.proteins.fa
-m local -o out_iprscan/persea.XML
--iprscan_path /home/efrain.escudero/bin/miniforge3/envs/funannotate/bin/interproscan.sh -c 64
It writes an XML in the output directory, however, it's empty. Outside directory "predictions", a folder appears containing temporary files (proteins). Phobius and SignalP are installed and recognised.
Logfile:
Running InterProScan5 on 7917 proteins
Important: you need to manually configure your interproscan.properties file for embedded workers.
Will try to launch 64 interproscan processes, adjust -c,--cpus for your system
Progress: 8 complete, 0 failed, 0 remaining
Traceback (most recent call last):
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/site-packages/funannotate/aux_scripts/iprscan-local.py", line 409, in
shutil.rmtree(tmpdir)
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 734, in rmtree
_rmtree_safe_fd(fd, path, onerror)
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 667, in _rmtree_safe_fd
_rmtree_safe_fd(dirfd, fullname, onerror)
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 667, in _rmtree_safe_fd
_rmtree_safe_fd(dirfd, fullname, onerror)
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 673, in _rmtree_safe_fd
onerror(os.rmdir, fullname, sys.exc_info())
File "/home/efrain.escudero/bin/miniforge3/envs/funannotate/lib/python3.9/shutil.py", line 671, in _rmtree_safe_fd
os.rmdir(entry.name, dir_fd=topfd)
OSError: [Errno 39] Directory not empty: 'jobPanther'
Running in HPC with Red Hat Enterprise Linux 8.6
The text was updated successfully, but these errors were encountered: