nf-core CI

Dsl2 sex determination #2472

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Triggered via pull request January 26, 2024 09:05

jbv2

synchronize #1035

dsl2-sex_determination

Status Failure

Total duration 46s

Artifacts –

ci.yml

on: pull_request

Matrix: Run pipeline with test data

Annotations

15 errors and 14 warnings

Run pipeline with test data (latest-everything, -profile test,docker --skip_preprocessing)

Process completed with exit code 1.

Run pipeline with test data (latest-everything, -profile test_multiref,docker)

The job was canceled because "latest-everything_-prof_5" failed.

Run pipeline with test data (latest-everything, -profile test_multiref,docker)

Process completed with exit code 1.

Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool fastp --preproces...

Process completed with exit code 1.

Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_mtnucratio --run_contam...

Process completed with exit code 1.

Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bowtie2)

Process completed with exit code 1.

Run pipeline with test data (23.04.0, -profile test_multiref,docker)

The operation was canceled.

Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool adapterremoval --...

The operation was canceled.

Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bwamem --run_mapdamage_...

The operation was canceled.

Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bwamem --run_...

The operation was canceled.

Run pipeline with test data (23.04.0, -profile test,docker --skip_preprocessing)

The operation was canceled.

Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool fastp -...

The operation was canceled.

Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool adapter...

The operation was canceled.

Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_mtnucratio --...

The operation was canceled.

Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bowtie2)

The operation was canceled.

Run pipeline with test data (latest-everything, -profile test,docker --skip_preprocessing)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (latest-everything, -profile test_multiref,docker)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool fastp --preproces...

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (23.04.0, -profile test_humanbam,docker --run_mtnucratio --run_contam...

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bowtie2)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (23.04.0, -profile test_multiref,docker)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (23.04.0, -profile test,docker --preprocessing_tool adapterremoval --...

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (23.04.0, -profile test,docker --mapping_tool bwamem --run_mapdamage_...

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bwamem --run_...

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (23.04.0, -profile test,docker --skip_preprocessing)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool fastp -...

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (latest-everything, -profile test,docker --preprocessing_tool adapter...

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (latest-everything, -profile test_humanbam,docker --run_mtnucratio --...

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Run pipeline with test data (latest-everything, -profile test,docker --mapping_tool bowtie2)

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.