From 1e8fddab21cf3c84dcbd4a8e2fd94a9e9a9f663d Mon Sep 17 00:00:00 2001
From: Thiseas Christos Lamnidis <thisseass@gmail.com>
Date: Fri, 14 Feb 2025 11:45:03 +0100
Subject: [PATCH] correct importing of metagenomics SWF

---
 workflows/eager.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflows/eager.nf b/workflows/eager.nf
index b01f769e..9dbf9b54 100644
--- a/workflows/eager.nf
+++ b/workflows/eager.nf
@@ -27,7 +27,7 @@ include { MAP                                                 } from '../subwork
 include { FILTER_BAM                                          } from '../subworkflows/local/bamfiltering.nf'
 include { DEDUPLICATE                                         } from '../subworkflows/local/deduplicate'
 include { MANIPULATE_DAMAGE                                   } from '../subworkflows/local/manipulate_damage'
-include { METAGENOMICS_COMPLEXITYFILTER                       } from '../subworkflows/local/metagenomics_complexityfilter'
+include { METAGENOMICS                                        } from '../subworkflows/local/metagenomics'
 include { ESTIMATE_CONTAMINATION                              } from '../subworkflows/local/estimate_contamination'
 include { CALCULATE_DAMAGE                                    } from '../subworkflows/local/calculate_damage'
 include { RUN_SEXDETERRMINE                                   } from '../subworkflows/local/run_sex_determination'