diff --git a/workflows/eager.nf b/workflows/eager.nf index 9dbf9b54..dd98a790 100644 --- a/workflows/eager.nf +++ b/workflows/eager.nf @@ -432,15 +432,12 @@ workflow EAGER { ch_multiqc_files = ch_multiqc_files.mix(PRESEQ_CCURVE.out.c_curve.collect { it[1] }.ifEmpty([])) ch_versions = ch_versions.mix(PRESEQ_CCURVE.out.versions) } - else { - (!params.mapstats_skip_preseq && params.mapstats_preseq_mode == 'lc_extrap').call { + else if (!params.mapstats_skip_preseq && params.mapstats_preseq_mode == 'lc_extrap') { PRESEQ_LCEXTRAP(ch_reads_for_deduplication.map { [it[0], it[1]] }) ch_multiqc_files = ch_multiqc_files.mix(PRESEQ_LCEXTRAP.out.lc_extrap.collect { it[1] }.ifEmpty([])) ch_versions = ch_versions.mix(PRESEQ_LCEXTRAP.out.versions) - } } - // // MODULE: Bedtools coverage //