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Removing ci test since it is already part of test config
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shyama-mama committed Nov 3, 2023
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1 change: 0 additions & 1 deletion .github/workflows/ci.yml
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Expand Up @@ -32,7 +32,6 @@ jobs:
- "-profile test,docker --mapping_tool bwamem --run_mapdamage_rescaling --run_pmd_filtering --run_trim_bam"
- "-profile test,docker --mapping_tool bowtie2"
- "-profile test,docker --skip_preprocessing"
- "-profile test,docker --run_fastq_sharding --fastq_shard_size 1000"
- "-profile test_humanbam,docker --run_mtnucratio --run_contamination_estimation_angsd --snpcapture_bed 'https://raw.githubusercontent.com/nf-core/test-datasets/eager/reference/Human/1240K.pos.list_hs37d5.0based.bed.gz'"
- "-profile test_multiref,docker" ## TODO add damage manipulation here instead once it goes multiref
steps:
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