diff --git a/subworkflows/local/merge_lanes_inputbam.nf b/subworkflows/local/merge_lanes_inputbam.nf index cccef0e1..4f0fa213 100644 --- a/subworkflows/local/merge_lanes_inputbam.nf +++ b/subworkflows/local/merge_lanes_inputbam.nf @@ -15,9 +15,6 @@ workflow MERGE_LANES_INPUTBAM { ch_versions = Channel.empty() ch_multiqc_files = Channel.empty() - - ch_input_bam = bams - ch_input_for_lane_merge = bams .map { meta, bam, bai -> [ meta.clone().findAll{ it.key !in ['lane', 'colour_chemistry', 'shard_number'] }, bam ] } .groupTuple()