diff --git a/workflows/eager.nf b/workflows/eager.nf index b01f769e..9dbf9b54 100644 --- a/workflows/eager.nf +++ b/workflows/eager.nf @@ -27,7 +27,7 @@ include { MAP } from '../subwork include { FILTER_BAM } from '../subworkflows/local/bamfiltering.nf' include { DEDUPLICATE } from '../subworkflows/local/deduplicate' include { MANIPULATE_DAMAGE } from '../subworkflows/local/manipulate_damage' -include { METAGENOMICS_COMPLEXITYFILTER } from '../subworkflows/local/metagenomics_complexityfilter' +include { METAGENOMICS } from '../subworkflows/local/metagenomics' include { ESTIMATE_CONTAMINATION } from '../subworkflows/local/estimate_contamination' include { CALCULATE_DAMAGE } from '../subworkflows/local/calculate_damage' include { RUN_SEXDETERRMINE } from '../subworkflows/local/run_sex_determination'