From e0c69120c223d31b836b2d777df7c49e1756c23c Mon Sep 17 00:00:00 2001
From: shyama-mama <1996shyam@gmail.com>
Date: Sat, 4 Nov 2023 01:08:13 +1030
Subject: [PATCH] Adding testing for sharding

---
 .github/workflows/ci.yml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 5437003e0..ec1add6dc 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -32,6 +32,7 @@ jobs:
           - "-profile test,docker --mapping_tool bwamem --run_mapdamage_rescaling --run_pmd_filtering --run_trim_bam"
           - "-profile test,docker --mapping_tool bowtie2"
           - "-profile test,docker --skip_preprocessing"
+          - "-profile test,docker --run_fastq_sharding --fastq_shard_size 1000"
           - "-profile test_humanbam,docker --run_mtnucratio --run_contamination_estimation_angsd --snpcapture_bed 'https://raw.githubusercontent.com/nf-core/test-datasets/eager/reference/Human/1240K.pos.list_hs37d5.0based.bed.gz'"
           - "-profile test_multiref,docker" ## TODO add damage manipulation here instead once it goes multiref
     steps: