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CHANGELOG.md

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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## v4.0.0 - [2025-05-16]
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## v4.0.0 - [2025-05-22]
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### `Added`
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docs/usage.md

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## A note on GTDB having too many files or using too many inodes
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The GTDB is very large both in size and by the number of files it contains.
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The uncompressed database requires >200k inodes, which can be problematic for users with limited storage resources.
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The uncompressed database requires >200k files (or more specifically: inodes), which can be problematic for users with limited storage resources.
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One workaround for this is to economize on inodes by using a SquashFS image version of the `.tar.gz` GTDB archive, and supply this to the pipeline via a configuration file.
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One workaround for this is to economize on files/inodes by using a SquashFS image version of the `.tar.gz` GTDB archive, and supply this to the pipeline via a configuration file.
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:::warning
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This feature is only available with container engines `apptainer` and `singularity`!

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