V2: Removal of namespace in schema files. (#15)

Raphael-Gazzotti · web-flow · commit 10ee61dd93e6 · 2024-09-24T21:04:01.000+02:00
* Removal of former namespace.

* Removal of submodule name in paths.

* Keep the module prefix.

---------

Co-authored-by: raphaelgazzotti &lt;raphael.gazzotti@ebrains.eu&gt;
diff --git a/schemas/activity/cranialWindowPreparation.schema.tpl.json b/schemas/activity/cranialWindowPreparation.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/specimenPrep/CranialWindowPreparation",
+  "_type": "specimenPrep:CranialWindowPreparation",
   "_extends": "/core/schemas/research/experimentalActivity.schema.tpl.json",
   "required": [
     "constructionType"
@@ -8,7 +8,7 @@
     "constructionType": {
       "_instruction": "Add the construction type of the cranial window.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/controlledTerms/CranialWindowConstructionType"
+        "controlledTerms:CranialWindowConstructionType"
       ]
     },
     "dimension": {
@@ -20,19 +20,19 @@
     "input": {
       "_instruction": "Add the state of the subject which received the cranial window before this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/core/SubjectState"
+        "core:SubjectState"
       ]
     },
     "output": {
       "_instruction": "Add the state of the subject which received the cranial window as a result of this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/core/SubjectState"
+        "core:SubjectState"
       ]
     },
     "reinforcementType": {
       "_instruction": "Add the reinforcement type of the cranial window.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/controlledTerms/CranialWindowReinforcementType"
+        "controlledTerms:CranialWindowReinforcementType"
       ]
     }
   }
diff --git a/schemas/activity/devicePlacement.schema.tpl.json b/schemas/activity/devicePlacement.schema.tpl.json
@@ -16,8 +16,8 @@
     "input": {
       "_instruction": "Add the state of the specimen that the device is being placed in or on during this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/core/TissueSampleState",
-        "https://openminds.ebrains.eu/core/SubjectState"
+        "core:TissueSampleState",
+        "core:SubjectState"
       ]
     },
     "output": {
@@ -26,8 +26,8 @@
       "uniqueItems": true,
       "_instruction": "Add all states of the specimen(s) that the device was placed in or on as a result of this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/core/TissueSampleState",
-        "https://openminds.ebrains.eu/core/SubjectState"
+        "core:TissueSampleState",
+        "core:SubjectState"
       ]
     },
     "targetPosition": {
diff --git a/schemas/activity/tissueCulturePreparation.schema.tpl.json b/schemas/activity/tissueCulturePreparation.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/specimenPrep/TissueCulturePreparation",
+  "_type": "specimenPrep:TissueCulturePreparation",
   "_extends": "/core/schemas/research/experimentalActivity.schema.tpl.json",
   "required": [
     "cultureMedium",
@@ -9,28 +9,28 @@
     "cultureMedium": {
       "_instruction": "Add the culture medium used during this tissue culture preparation.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture"
+        "chemicals:ChemicalMixture"
       ]
     },
     "cultureType": {
       "_instruction": "Add the cell culture type of the resulting tissue cell culture.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/controlledTerms/CellCultureType"
+        "controlledTerms:CellCultureType"
       ]
     },
     "input": {
       "_instruction": "Add the state of the specimen before it was prepared as culture in this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/core/TissueSampleState",
-        "https://openminds.ebrains.eu/core/TissueSampleCollectionState",
-        "https://openminds.ebrains.eu/core/SubjectGroupState",
-        "https://openminds.ebrains.eu/core/SubjectState"
+        "core:TissueSampleState",
+        "core:TissueSampleCollectionState",
+        "core:SubjectGroupState",
+        "core:SubjectState"
       ]
     },
     "output": {
       "_instruction": "Add the state of the prepared tissue sample culture that resulted from this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/core/TissueSampleState"
+        "core:TissueSampleState"
       ]
     }
   }
diff --git a/schemas/activity/tissueSampleSlicing.schema.tpl.json b/schemas/activity/tissueSampleSlicing.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/specimenPrep/TissueSampleSlicing",
+  "_type": "specimenPrep:TissueSampleSlicing",
   "_extends": "/core/schemas/research/experimentalActivity.schema.tpl.json",
   "required": [
     "device"
@@ -8,15 +8,15 @@
     "device": {
       "_instruction": "Add the device used to slice the tissue sample.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/specimenPrep/SlicingDeviceUsage"
+        "specimenPrep:SlicingDeviceUsage"
       ]
     },
     "input": {
       "_instruction": "Add the state of the specimen that was sliced during this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/core/SubjectState",
-        "https://openminds.ebrains.eu/core/TissueSampleCollectionState",
-        "https://openminds.ebrains.eu/core/TissueSampleState"
+        "core:SubjectState",
+        "core:TissueSampleCollectionState",
+        "core:TissueSampleState"
       ]
     },
     "output": {
@@ -25,21 +25,21 @@
       "minItems": 1,
       "uniqueItems": true,
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/core/TissueSampleCollectionState",
-        "https://openminds.ebrains.eu/core/TissueSampleState"
+        "core:TissueSampleCollectionState",
+        "core:TissueSampleState"
       ]
     },
     "temperature": {
       "_instruction": "Enter the temperature at which the tissue sample was sliced during the activity.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue",
-        "https://openminds.ebrains.eu/core/QuantitativeValueRange"
+        "core:QuantitativeValue",
+        "core:QuantitativeValueRange"
       ]
     },
     "tissueBathSolution": {
       "_instruction": "Add the chemical mixture used as bath solution during this activity.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/chemicals/ChemicalMixture"
+        "chemicals:ChemicalMixture"
       ]
     }
   }
diff --git a/schemas/device/slicingDevice.schema.tpl.json b/schemas/device/slicingDevice.schema.tpl.json
@@ -1,4 +1,4 @@
 {
-  "_type": "https://openminds.ebrains.eu/specimenPrep/SlicingDevice",
+  "_type": "specimenPrep:SlicingDevice",
   "_extends": "/core/schemas/products/device.schema.tpl.json"
 }
diff --git a/schemas/device/slicingDeviceUsage.schema.tpl.json b/schemas/device/slicingDeviceUsage.schema.tpl.json
@@ -1,5 +1,5 @@
 {
-  "_type": "https://openminds.ebrains.eu/specimenPrep/SlicingDeviceUsage",
+  "_type": "specimenPrep:SlicingDeviceUsage",
   "_extends": "/core/schemas/research/deviceUsage.schema.tpl.json",
   "required": [
     "sliceThickness",
@@ -9,20 +9,20 @@
     "device": {
       "_instruction": "Add the slicing device used.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/specimenPrep/SlicingDevice"
+        "specimenPrep:SlicingDevice"
       ]
     },
     "oscillationAmplitude": {
       "_instruction": "Enter the oscillation amplitude of the blade from the slicing device during its use.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue"
+        "core:QuantitativeValue"
       ]
     },
     "sliceThickness": {
       "_instruction": "Enter the defined slice thickness during the use of this slicing device.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue",
-        "https://openminds.ebrains.eu/core/QuantitativeValueRange"
+        "core:QuantitativeValue",
+        "core:QuantitativeValueRange"
       ]
     },
     "slicingAngle": {
@@ -31,26 +31,26 @@
       "maxItems": 2,
       "_instruction": "Enter all slicing angles (intentional or unintentional) in relation to the slicing plane used during this activity.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue",
-        "https://openminds.ebrains.eu/core/NumericalProperty"
+        "core:QuantitativeValue",
+        "core:NumericalProperty"
       ]
     },
     "slicingPlane": {
       "_instruction": "Add the anatomical plane that best describes the slicing direction of the tissue sample(s) during the use of this slicing device.",
       "_linkedTypes": [
-        "https://openminds.ebrains.eu/controlledTerms/AnatomicalPlane"
+        "controlledTerms:AnatomicalPlane"
       ]
     },
     "slicingSpeed": {
       "_instruction": "Enter the defined slicing speed during the use of this slicing device.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue"
+        "core:QuantitativeValue"
       ]
     },
     "vibrationFrequency": {
       "_instruction": "Enter the defined vibration frequency during the use of this slicing device.",
       "_embeddedTypes": [
-        "https://openminds.ebrains.eu/core/QuantitativeValue"
+        "core:QuantitativeValue"
       ]
     }
   }
diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-v1
+v2

Original file line number	Diff line number	Diff line change
`@@ -1,5 +1,5 @@`
`1`	`1`	`{`
`2`		`- "_type": "https://openminds.ebrains.eu/specimenPrep/CranialWindowPreparation",`
	`2`	`+ "_type": "specimenPrep:CranialWindowPreparation",`
`3`	`3`	`"_extends": "/core/schemas/research/experimentalActivity.schema.tpl.json",`
`4`	`4`	`"required": [`
`5`	`5`	`"constructionType"`
`@@ -8,7 +8,7 @@`
`8`	`8`	`"constructionType": {`
`9`	`9`	`"_instruction": "Add the construction type of the cranial window.",`
`10`	`10`	`"_linkedTypes": [`
`11`		`- "https://openminds.ebrains.eu/controlledTerms/CranialWindowConstructionType"`
	`11`	`+ "controlledTerms:CranialWindowConstructionType"`
`12`	`12`	`]`
`13`	`13`	`},`
`14`	`14`	`"dimension": {`
`@@ -20,19 +20,19 @@`
`20`	`20`	`"input": {`
`21`	`21`	`"_instruction": "Add the state of the subject which received the cranial window before this activity.",`
`22`	`22`	`"_linkedTypes": [`
`23`		`- "https://openminds.ebrains.eu/core/SubjectState"`
	`23`	`+ "core:SubjectState"`
`24`	`24`	`]`
`25`	`25`	`},`
`26`	`26`	`"output": {`
`27`	`27`	`"_instruction": "Add the state of the subject which received the cranial window as a result of this activity.",`
`28`	`28`	`"_linkedTypes": [`
`29`		`- "https://openminds.ebrains.eu/core/SubjectState"`
	`29`	`+ "core:SubjectState"`
`30`	`30`	`]`
`31`	`31`	`},`
`32`	`32`	`"reinforcementType": {`
`33`	`33`	`"_instruction": "Add the reinforcement type of the cranial window.",`
`34`	`34`	`"_linkedTypes": [`
`35`		`- "https://openminds.ebrains.eu/controlledTerms/CranialWindowReinforcementType"`
	`35`	`+ "controlledTerms:CranialWindowReinforcementType"`
`36`	`36`	`]`
`37`	`37`	`}`
`38`	`38`	`}`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`	`1`	`{`
`2`		`- "_type": "https://openminds.ebrains.eu/specimenPrep/SlicingDevice",`
	`2`	`+ "_type": "specimenPrep:SlicingDevice",`
`3`	`3`	`"_extends": "/core/schemas/products/device.schema.tpl.json"`
`4`	`4`	`}`