Remove deprecated methods #4402

Job	Run time
build jvm	7m 8s
lint	13m 5s
build native	13m 58s
ruby/spec on CRuby 3.0	3m 30s
ruby/spec on CRuby 3.1	3m 21s
ruby/spec on CRuby 3.2	2m 52s
test integration	2m 1s
specs :truffle	8m 22s
fast specs	1m 35s
specs :language :core	10m 56s
specs :library :cext :security :command_line :tracepoint	8m 45s
run MRI tests on native	22s
test native	2m 3s
	1h 17m 58s

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