Remove deprecated methods #4403

Job	Run time
build native	13m 32s
lint	12m 50s
build jvm	6m 36s
ruby/spec on CRuby 3.0	3m 29s
ruby/spec on CRuby 3.1	3m 22s
ruby/spec on CRuby 3.2	2m 51s
fast specs	1m 37s
test integration	2m 27s
specs :truffle	8m 45s
specs :language :core	10m 49s
specs :library :cext :security :command_line :tracepoint	8m 23s
test native	2m 19s
run MRI tests on native	23s
	1h 17m 23s

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