Imageomics Institute

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69 repositories

pybioclip
Public
Python package that simplifies using the BioCLIP foundation model.
Python
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MIT License
•7•31•5•1•Updated May 30, 2025May 30, 2025
distributed-downloader
Public
MPI-based distributed downloading tool for retrieving data from diverse domains.
downloader dataset-generation mpi-applications
Python
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MIT License
•0•2•4•1•Updated May 30, 2025May 30, 2025
dna-trait-analysis
Public
Goal: to find associations between dna data and visual traits.
Jupyter Notebook
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MIT License
•0•4•7•0•Updated May 28, 2025May 28, 2025
ml-morph
Public
Machine-learning-based morphometrics
Python
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GNU General Public License v3.0
•11•0•0•0•Updated May 28, 2025May 28, 2025
TaxonoPy
Public
A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier
Python
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MIT License
•0•0•4•0•Updated May 23, 2025May 23, 2025
mmla
Public
Scripts for MMLA dataset
Jupyter Notebook
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MIT License
•0•1•0•4•Updated May 14, 2025May 14, 2025
kabr-tools
Public
Tools for working with data for annotating animal behavior. These were specifically designed during construction of the KABR dataset.
annotation animal-behavior-recognition drone-videos
Python
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MIT License
•0•4•18•8•Updated May 13, 2025May 13, 2025
EcoPalette
Public
Integration of environmental data into species images to assess model accuracy importance.
R
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MIT License
•0•0•0•0•Updated May 8, 2025May 8, 2025
HDR-anomaly-challenge-sample
Public
Sample Submission Repository for the 2024 HDR Anomaly Challenge
sample-code anomaly-detection butterflies ml-challenge
Jupyter Notebook
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MIT License
•4•6•1•2•Updated Apr 29, 2025Apr 29, 2025
HDR-anomaly-challenge
Public
Repository for Imageomics' CodaBench challenge as part of the HDR Anomaly ML Challenge.
anomaly-detection butterflies hybrid-detection ml-challenge
Python
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MIT License
•1•4•1•3•Updated Apr 29, 2025Apr 29, 2025
SST
Public
Official repo for paper "Static Segmentation by Tracking: A Frustratingly Label-Efficient Approach to Fine-Grained Segmentation"
Python
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MIT License
•1•8•0•4•Updated Apr 29, 2025Apr 29, 2025
Imageomics-guide
Public
Imageomics-focused guide to collaborative work, including GitHub and Hugging Face workflows.
git metadata documentation data guide best-practices models projects collaborative-workflows cli-cheatsheet
Python
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Creative Commons Zero v1.0 Universal
•0•3•13•1•Updated Apr 25, 2025Apr 25, 2025
wildwing
Public
Autonomous UAS Software for In Situ Imageomics Missions
drone animals autonomy
HTML
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MIT License
•1•3•11•5•Updated Apr 24, 2025Apr 24, 2025
bioclip-vector-db
Public
Vector database training data retrieval of BioCLIP-embedded nearest neighbors.
Jupyter Notebook
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MIT License
•1•0•7•2•Updated Apr 23, 2025Apr 23, 2025
BeetlePalooza-2024
Public
BeetlePalooza collaborative hands-on development event to be held at OSU August 12-15, 2024
Jupyter Notebook
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Creative Commons Zero v1.0 Universal
•0•3•12•0•Updated Apr 23, 2025Apr 23, 2025
data-workshop-AH-2024
Public
Repository for Mastering Data Management Workshop at the All Hands 2024.
Jupyter Notebook
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Creative Commons Zero v1.0 Universal
•2•2•0•0•Updated Apr 23, 2025Apr 23, 2025
cautious-robot
Public
Simple images from CSV downloader that runs and records checksums on downloaded image folder.
csv download images checksums verifier downsized
Python
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MIT License
•0•3•9•0•Updated Apr 3, 2025Apr 3, 2025
sum-buddy
Public
Generate and save checksums for all (or certain) contents of given directory.
metadata csv images checksums deduplication verifier file-verification
Python
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MIT License
•0•3•5•0•Updated Apr 3, 2025Apr 3, 2025
Prompt_CAM
Public
This is an official implementation for PROMPT-CAM: A Simpler Interpretable Transformer for Fine-Grained Analysis (CVPR'25)
computer-vision saliency-map fine-grained-classification interpretable-ai explainable-ai xai interpretable-machine-learning counterfactual-explanations vision-transformer
Jupyter Notebook
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MIT License
•1•23•1•0•Updated Mar 28, 2025Mar 28, 2025
HComPNet
Public
Code repository for HComP-Net (ICLR'25)
computer-vision evolution traits phylogeny explainable-ai
Python
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MIT License
•1•0•0•14•Updated Mar 26, 2025Mar 26, 2025
Fish-Vista
Public
Fish-Vista: A Multi-Purpose Dataset for Understanding \& Identification of Traits from Images
Jupyter Notebook
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MIT License
•1•3•0•1•Updated Mar 25, 2025Mar 25, 2025
Finer-CAM
Public
This is an official implementation for Finer-CAM: Spotting the Difference Reveals Finer Details for Visual Explanation. [CVPR'25]
computer-vision visualizations class-activation-maps fine-grained-classification explainable-ai xai saliency-maps vision-transformers
Jupyter Notebook
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Apache License 2.0
•3•33•0•0•Updated Mar 14, 2025Mar 14, 2025
2018-NEON-beetles-processing
Public
Processing code and exploratory notebooks for BeetlePalooza dataset (2018 NEON Ethanol-preserved Ground Beetles).
annotation images eda segmentation beetles
Jupyter Notebook
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MIT License
•2•0•2•2•Updated Mar 14, 2025Mar 14, 2025
bioclip
Public
This is the repository for the BioCLIP model and the TreeOfLife-10M dataset [CVPR'24 Oral, Best Student Paper].
computer-vision taxonomy clip knowledge-guided-machine-learning imageomics
Python
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Other
•20•202•2•0•Updated Feb 26, 2025Feb 26, 2025
sdm-beetlepalooza
Public
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Feb 26, 2025Feb 26, 2025
color-calibration
Public
Provides python code for calibrating image colors containing color cards
Python
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MIT License
•0•0•2•0•Updated Feb 24, 2025Feb 24, 2025
wing-segmentation
Public
Butterfly wing segmentation
rgb segmentation butterfly ruler whitebalance colorchecker wing-segmentation heliconius forewings hindwings
Jupyter Notebook
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MIT License
•1•1•2•2•Updated Feb 21, 2025Feb 21, 2025
snakemake-workshop
Public
Lesson on creating a Snakemake Workflow with an Imageomics emphasis
Other
•0•1•4•0•Updated Feb 18, 2025Feb 18, 2025
Andromeda
Public
A website that enables users to explore high-dimensional image data
Jupyter Notebook
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MIT License
•1•2•6•1•Updated Feb 13, 2025Feb 13, 2025
2025-02-11-osu-online
Public
Software Carpentry Workshop on Version Control with Git and R for Scientific Reproducibility
HTML
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Other
•0•0•0•0•Updated Feb 11, 2025Feb 11, 2025