Skip to content

@OHDSI Observational Health Data Sciences and Informatics

Change the repository type filter

All

    Repositories list

    321 repositories

    • TheBookOfOhdsiInJapanese

      Public
      A translation of https://github.com/OHDSI/TheBookOfOhdsi into Japanese
      R
      •
      Creative Commons Zero v1.0 Universal
      •3•1•0•1•Updated Feb 25, 2025Feb 25, 2025

    • ShinyProxyDeploy

      Public
      Deploy OHDSI Shiny apps to results.ohdsi.org
      3•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • PhenotypePhebruary2025

      Public
      Dockerfile
      •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • OhdsiReportGenerator

      Public
      Code to extract data from the OHDSI results structure and generate plots, presentations and reports
      R
      •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • ClinicalCharacteristics

      Public
      [under development] table shell approach to OMOP characterization
      R
      •
      Apache License 2.0
      •1•0•11•0•Updated Feb 24, 2025Feb 24, 2025

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•11•0•Updated Feb 24, 2025Feb 24, 2025

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •16•16•0•1•Updated Feb 24, 2025Feb 24, 2025

    • EvidenceSynthesis

      Public
      An R package for combining evidence from multiple sources (e.g. multiple data sites)
      hades
      R
      •8•8•3•0•Updated Feb 24, 2025Feb 24, 2025

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•12•25•1•Updated Feb 24, 2025Feb 24, 2025

    • FeatureExtraction

      Public
      An R package for generating features (covariates) for a cohort using data in the Common Data Model.
      hades
      R
      •60•62•44•8•Updated Feb 24, 2025Feb 24, 2025

    • CohortAlgebra

      Public
      Cohort Algebra to create new cohort(s) from existing cohorts. This is NOT part of HADES. CohortGenerator is expected to replace CohortAlgebra
      R
      •0•1•0•1•Updated Feb 23, 2025Feb 23, 2025

    • CommunityDashboard

      Public
      Dashboard to monitor the health of the OHDSI community. A Flask app of Dash Dashboards for tracking public API's
      TypeScript
      •
      Apache License 2.0
      •1•6•11•0•Updated Feb 23, 2025Feb 23, 2025

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•2•45•4•Updated Feb 22, 2025Feb 22, 2025

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •7•12•40•2•Updated Feb 21, 2025Feb 21, 2025

    • ETL-Synthea

      Public
      A package supporting the conversion from Synthea CSV to OMOP CDM
      etl
      R
      •74•103•2•0•Updated Feb 21, 2025Feb 21, 2025

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      R
      •90•189•26•3•Updated Feb 21, 2025Feb 21, 2025

    • DatabaseConnector

      Public
      An R package for connecting to databases using JDBC.
      hades
      R
      •85•56•34•2•Updated Feb 21, 2025Feb 21, 2025

    • OhdsiShinyModules

      Public
      An R package containing Shiny modules used by various OHDSI Shiny apps
      R
      •11•8•60•4•Updated Feb 21, 2025Feb 21, 2025

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•10•4•Updated Feb 20, 2025Feb 20, 2025

    • CommonDataModel

      Public
      Definition and DDLs for the OMOP Common Data Model (CDM)
      HTML
      •458•917•85•12•Updated Feb 20, 2025Feb 20, 2025

    • drat

      Public
      drat repository for OHDSI R packages
      7•5•0•0•Updated Feb 20, 2025Feb 20, 2025

    • ReportGenerator

      Public
      A package that creates friendly report from results saved in an OHDSI standardized result database
      R
      •1•0•0•1•Updated Feb 20, 2025Feb 20, 2025

    • ShinyAppBuilder

      Public
      Create shiny apps using modules from OhdsiShinyModules or custom modules
      R
      •2•7•4•1•Updated Feb 20, 2025Feb 20, 2025

    • OhdsiShinyAppBuilder

      Public
      A package that lets you build an interactive results viewer for one or more type of OHDSI analysis
      R
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • Characterization

      Public
      Various types of characterizations of a target and outcome cohort.
      R
      •5•3•5•4•Updated Feb 20, 2025Feb 20, 2025

    • Hades

      Public
      Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.
      hades
      R
      •
      Apache License 2.0
      •13•24•15•5•Updated Feb 20, 2025Feb 20, 2025

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•15•0•Updated Feb 20, 2025Feb 20, 2025

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •74•232•224•14•Updated Feb 20, 2025Feb 20, 2025

    • OhdsiPredictionTutorial

      Public
      ShinyProxy example Shiny app
      R
      •0•0•1•0•Updated Feb 19, 2025Feb 19, 2025

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•2•27•0•Updated Feb 19, 2025Feb 19, 2025