Repositories list

• xiRT

  Public
  Multi-Dimensional Retention Time Prediction for Linear and Crosslinked Peptides

  machine-learningdeep-learningproteomics+ 1crosslinking

  Python

  •

  Apache License 2.0

  •2•8•4•6•Updated Feb 25, 2025Feb 25, 2025

• xiUtilities

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

• xiview-api

  Public
  xiview-api provides REST endpoints to access crosslinking resources in PRIDE

  Python

  •

  Apache License 2.0

  •3•0•0•0•Updated Feb 14, 2025Feb 14, 2025

• preprocessing

  Public
  Python

  •5•1•0•2•Updated Feb 13, 2025Feb 13, 2025

• xiFDR

  Public
  Generic FDR-Calculation for cross-linked PSMs and resulting peptide pairs, links and protein pairs

  Java

  •

  Apache License 2.0

  •5•6•14•0•Updated Feb 13, 2025Feb 13, 2025

• xi-mzidentml-converter

  Public
  Python

  •

  Apache License 2.0

  •6•2•2•1•Updated Feb 12, 2025Feb 12, 2025

• AlphaLink2

  Public
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer

  Python

  •

  Creative Commons Attribution 4.0 International

  •16•53•25•0•Updated Jan 22, 2025Jan 22, 2025

• xiSPEC_website

  Public
  JavaScript

  •

  Apache License 2.0

  •3•3•7•0•Updated Jan 8, 2025Jan 8, 2025

• build-xiview

  Public
  JavaScript

  •

  GNU General Public License v3.0

  •2•2•21•0•Updated Jan 8, 2025Jan 8, 2025

• xiview

  Public
  JavaScript

  •

  GNU General Public License v2.0

  •6•4•8•0•Updated Jan 8, 2025Jan 8, 2025

• CLMS-model

  Public
  JavaScript

  •

  Apache License 2.0

  •2•0•0•0•Updated Dec 17, 2024Dec 17, 2024

• XiSearch

  Public
  XiSearch

  Java

  •

  Apache License 2.0

  •7•11•24•0•Updated Nov 13, 2024Nov 13, 2024

• xiview-server

  Public
  HTML

  •2•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• xiSPEC_spectrumViewer

  Public
  JavaScript

  •

  Apache License 2.0

  •4•1•2•0•Updated Oct 14, 2024Oct 14, 2024

• crosslink-viewer

  Public
  web based visualisation of CLMS data

  JavaScript

  •

  Apache License 2.0

  •11•0•3•0•Updated Aug 6, 2024Aug 6, 2024

• pyXiAnnotator

  Public
  Python

  •

  Apache License 2.0

  •3•0•0•1•Updated May 30, 2024May 30, 2024

• xiDOUBLET

  Public
  Python

  •

  Apache License 2.0

  •0•3•0•0•Updated Apr 26, 2024Apr 26, 2024

• history

  Public
  history page

  JavaScript

  •2•0•0•0•Updated Jan 18, 2024Jan 18, 2024

• xidocs

  Public
  Online documentation for xiview and associated pages

  HTML

  •

  Apache License 2.0

  •1•0•1•0•Updated Oct 20, 2023Oct 20, 2023

• XiLauncher

  Public
  A small application used to launch searches that are pending in the database

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Jun 5, 2023Jun 5, 2023

• xiAnnotator

  Public
  Spectrum annotator using xi

  Java

  •

  Apache License 2.0

  •2•0•6•2•Updated May 30, 2023May 30, 2023

• _xiFDR_-Wrapper

  Public
  Python

  •0•0•0•0•Updated May 4, 2023May 4, 2023

• searchSubmit

  Public
  JavaScript

  •3•0•0•0•Updated Mar 16, 2023Mar 16, 2023

• vendor

  Public
  javascript libs used by xi interface

  JavaScript

  •2•0•0•0•Updated Mar 16, 2023Mar 16, 2023

• userGUI

  Public
  Interface for user admin management

  JavaScript

  •1•0•0•0•Updated Mar 15, 2023Mar 15, 2023

• ComplexViewer

  Public
  web based visualisation of molecular interaction data

  JavaScript

  •

  Apache License 2.0

  •9•0•0•0•Updated Dec 22, 2022Dec 22, 2022

• Alphafold-analysis

  Public
  scripts to visualise results of alphafold and alphafold multimer runs

  Python

  •5•0•0•0•Updated Jul 20, 2022Jul 20, 2022

• xiDIA-library

  Public
  Python

  •

  Apache License 2.0

  •1•1•0•0•Updated Jul 7, 2022Jul 7, 2022

• progulons_v2

  Public
  R scripts and input files for the manuscript "Higher-order modular regulation of the human proteome"

  R

  •0•0•0•0•Updated Jun 1, 2022Jun 1, 2022

• xiFAIMS

  Public
  Analysis of CLMS FAIMS Data

  Jupyter Notebook

  •

  Apache License 2.0

  •1•0•0•0•Updated Jul 10, 2021Jul 10, 2021