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    90 repositories

    • datajoint-python

      Public
      Relational data pipelines for the science lab
      mysqlpythons3databasespipeline-frameworkscientific-computingcloud-computingdata-analysisrelational-databasesdata-pipelines
      Python
      •
      GNU Lesser General Public License v2.1
      •85•174•130•2•Updated Feb 22, 2025Feb 22, 2025

    • element-facemap

      Public
      DataJoint Element for behavioral analysis with Facemap
      Jupyter Notebook
      •
      MIT License
      •13•3•0•0•Updated Feb 19, 2025Feb 19, 2025

    • element-event

      Public
      DataJoint Element for event-based behavior experiments
      behaviorneuroscience
      Python
      •
      MIT License
      •18•1•3•0•Updated Feb 19, 2025Feb 19, 2025

    • .github

      Public
      Organizational default configs for @datajoint repos
      MIT License
      •4•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • element-array-ephys

      Public
      DataJoint Element for Neuropixels analysis with Kilosort
      Python
      •
      MIT License
      •35•5•26•0•Updated Feb 14, 2025Feb 14, 2025

    • element-zstack

      Public
      DataJoint Element for volumetric data analysis using Cellpose
      Python
      •
      MIT License
      •7•0•1•0•Updated Feb 14, 2025Feb 14, 2025

    • element-session

      Public
      DataJoint Element for session management
      Python
      •
      MIT License
      •18•1•1•0•Updated Feb 14, 2025Feb 14, 2025

    • element-optogenetics

      Public
      DataJoint Element for optogenetic experiments
      Jupyter Notebook
      •
      MIT License
      •8•0•0•0•Updated Feb 14, 2025Feb 14, 2025

    • element-moseq

      Public
      DataJoint Element for Motion Sequencing with Keypoint-MoSeq
      Jupyter Notebook
      •
      MIT License
      •4•3•0•0•Updated Feb 14, 2025Feb 14, 2025

    • element-miniscope

      Public
      DataJoint Element for miniscope calcium imaging analysis with CaImAn
      Jupyter Notebook
      •
      MIT License
      •14•2•2•2•Updated Feb 14, 2025Feb 14, 2025

    • element-lab

      Public
      DataJoint Element for lab management
      Python
      •
      MIT License
      •16•1•2•0•Updated Feb 14, 2025Feb 14, 2025

    • element-interface

      Public
      Common functions for the DataJoint Elements
      Python
      •
      MIT License
      •17•3•9•3•Updated Feb 14, 2025Feb 14, 2025

    • element-electrode-localization

      Public
      DataJoint Element for localizing Neuropixels electrodes
      Jupyter Notebook
      •
      MIT License
      •9•0•3•0•Updated Feb 14, 2025Feb 14, 2025

    • element-deeplabcut

      Public
      DataJoint Element for behavioral analysis with DeepLabCut
      Jupyter Notebook
      •
      MIT License
      •38•13•8•0•Updated Feb 14, 2025Feb 14, 2025

    • element-calcium-imaging

      Public
      DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
      Jupyter Notebook
      •
      MIT License
      •43•9•13•0•Updated Feb 14, 2025Feb 14, 2025

    • element-animal

      Public
      DataJoint Element for animal management
      Python
      •
      MIT License
      •18•1•0•1•Updated Feb 14, 2025Feb 14, 2025

    • anscombe-numcodecs

      Public
      Numcodecs implementation of photon conversion using poisson statistics
      Python
      •
      MIT License
      •8•0•0•1•Updated Feb 11, 2025Feb 11, 2025

    • datajoint-docs

      Public
      Landing Page for DataJoint Documentation
      CSS
      •
      MIT License
      •11•4•2•1•Updated Feb 5, 2025Feb 5, 2025

    • datajoint-tutorials

      Public
      Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
      Jupyter Notebook
      •132•10•1•1•Updated Jan 29, 2025Jan 29, 2025

    • nginx-docker

      Public
      Python
      •5•0•1•0•Updated Jan 2, 2025Jan 2, 2025

    • manual-letsencrypt

      Public
      HCL
      •3•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • pharus

      Public
      Pharus is a generic REST API server backend for DataJoint pipelines built on top of flask, datajoint, and pyjwt.
      flaskdatajoint
      Python
      •
      MIT License
      •16•3•16•1•Updated Nov 15, 2024Nov 15, 2024

    • djtest-docker

      Public
      A docker image for running tests related to DataJoint Python.
      Shell
      •4•0•0•2•Updated Sep 3, 2024Sep 3, 2024

    • mysql-docker

      Public
      Docker image for MySQL configured to work with DataJoint
      Shell
      •17•18•6•1•Updated Sep 3, 2024Sep 3, 2024

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      Python
      •
      GNU General Public License v2.0
      •372•0•0•0•Updated Aug 7, 2024Aug 7, 2024

    • facemap

      Public
      Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.
      Python
      •
      GNU General Public License v3.0
      •63•0•0•0•Updated Aug 6, 2024Aug 6, 2024

    • miniconda3-docker

      Public
      A minimal base docker image with conda.
      docker-imageminiconda3
      Shell
      •6•0•4•1•Updated Aug 1, 2024Aug 1, 2024

    • djbase-docker

      Public
      A minimal base docker image with DataJoint Python dependencies installed.
      Shell
      •5•0•1•2•Updated Jul 29, 2024Jul 29, 2024

    • djlabhub-docker

      Public
      A docker image optimized for deploying to JupyterHub a JupyterLab environment with DataJoint Python.
      Python
      •6•3•7•1•Updated Jul 29, 2024Jul 29, 2024

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •248•0•0•0•Updated Jun 3, 2024Jun 3, 2024