Repositories list

• pic-sure-bdc-release-control

  Public
  Apache License 2.0

  •8•1•0•0•Updated Jun 3, 2025Jun 3, 2025

• pic-sure-auth-microapp

  Public
  Java

  •

  Apache License 2.0

  •5•4•0•2•Updated Jun 2, 2025Jun 2, 2025

• pic-sure

  Public
  PIC-SURE API

  Java

  •

  Apache License 2.0

  •3•6•0•7•Updated Jun 2, 2025Jun 2, 2025

• pic-sure-bdc-infrastructure

  Public
  HCL

  •

  Apache License 2.0

  •1•5•0•5•Updated Jun 2, 2025Jun 2, 2025

• PIC-SURE-Frontend

  Public
  A frontend for the PIC-SURE API

  TypeScript

  •

  Apache License 2.0

  •0•1•0•9•Updated Jun 2, 2025Jun 2, 2025

• pic-sure-hpds

  Public
  Java

  •

  Apache License 2.0

  •6•3•0•1•Updated Jun 2, 2025Jun 2, 2025

• pic-sure-metadata-curation

  Public
  Parse and generate variable-level data to be exposed through the search interface.

  SAS

  •

  Apache License 2.0

  •2•2•0•0•Updated Jun 2, 2025Jun 2, 2025

• Access-to-Data-using-PIC-SURE-API

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •8•7•0•0•Updated Jun 2, 2025Jun 2, 2025

• i2b2v2-webclient

  Public
  JavaScript

  •4•2•1•0•Updated Jun 2, 2025Jun 2, 2025

• hypatio-app

  Public
  Python

  •0•4•0•8•Updated Jun 2, 2025Jun 2, 2025

• dbmi-fileservice

  Public
  Python

  •0•2•0•4•Updated Jun 2, 2025Jun 2, 2025

• fhirquestionnaire

  Public
  HTML

  •0•2•0•4•Updated Jun 2, 2025Jun 2, 2025

• dbmisvc-starter

  Public
  Python

  •0•1•0•3•Updated Jun 2, 2025Jun 2, 2025

• viv

  Public
  Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

  imagingome-tiffopenmicroscopy+ 4gehlenborglabzarrhubmapviv

  JavaScript

  •

  MIT License

  •49•311•50•12•Updated Jun 1, 2025Jun 1, 2025

• vizarr

  Public
  A minimal Zarr image viewer based on Viv.

  jupyter-notebooksgehlenborglabzarr+ 2vivimjoy

  TypeScript

  •

  MIT License

  •22•151•20•11•Updated Jun 1, 2025Jun 1, 2025

• picsure-dictionary-etl

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated May 30, 2025May 30, 2025

• gehlenborglab-website

  Public
  Code for HIDIVE Lab website.

  websitegehlenborglabhidivelab

  TypeScript

  •

  MIT License

  •38•10•10•0•Updated May 30, 2025May 30, 2025

• pic-sure-all-in-one

  Public
  Shell

  •

  Apache License 2.0

  •12•4•0•0•Updated May 30, 2025May 30, 2025

• pic-sure-search-prototype

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated May 30, 2025May 30, 2025

• pic-sure-baseline-release-control

  Public
  5•0•0•0•Updated May 29, 2025May 29, 2025

• biodata_catalyst_stigmatizing_variables

  Public
  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•0•2•Updated May 27, 2025May 27, 2025

• DQVis-Generation

  Public
  code for generating training data used for fine-tuning the LLM

  Jupyter Notebook

  •

  MIT License

  •0•1•0•2•Updated May 23, 2025May 23, 2025

• chromoscope

  Public
  Interactive multiscale visualization for structural variation in human genomes

  TypeScript

  •

  MIT License

  •7•69•35•4•Updated May 22, 2025May 22, 2025

• avillachlab-jenkins-bdc-etl

  Public
  Shell

  •

  Apache License 2.0

  •0•0•0•0•Updated May 22, 2025May 22, 2025

• picsure-dictionary

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated May 21, 2025May 21, 2025

• DQVis-review

  Public
  For reviewing the generated datasets.

  Vue

  •

  MIT License

  •1•1•0•1•Updated May 20, 2025May 20, 2025

• pic-sure-services

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated May 20, 2025May 20, 2025

• ETLToolSuite-EntityGenerator

  Public
  This tool will generate Entity Files that can be used to load into Datasources.

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated May 20, 2025May 20, 2025

• pic-sure-gic-institution-release-control

  Public
  Apache License 2.0

  •0•0•0•0•Updated May 20, 2025May 20, 2025

• PIC-SURE-Migrations

  Public
  Database migrations for the PIC-SURE All-in-One.

  Apache License 2.0

  •0•0•0•0•Updated May 19, 2025May 19, 2025