Repositories list

• k-mers

  Public
  Experimenting with k-mers package, custom implemntations for k-mers, experimental KCTs

  Julia

  •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• bidra_robustness

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• FactorizedEmbeddings.jl

  Public
  HTML

  •

  MIT License

  •0•0•1•5•Updated Dec 16, 2024Dec 16, 2024

• leonard_thesis

  Public
  HTML

  •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

• DDPM_predoc

  Public
  Julia

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• BamQuery

  Public
  BamQuery provides RNA-seq quantification for a given peptide (from 8 to 11 residues) in chosen RNA-seq samples (single or bulk).

  Python

  •

  MIT License

  •2•4•4•0•Updated Aug 12, 2024Aug 12, 2024

• PoissonJUMP-DDPM-RNA

  Public
  Julia

  •0•1•0•0•Updated Jul 11, 2024Jul 11, 2024

• pepid

  Public
  Highly customizable research-oriented peptide search engine

  pythonbioinformaticsproteomics+ 2peptide-identificationpeptide

  Python

  •

  MIT License

  •1•2•0•0•Updated Jul 11, 2024Jul 11, 2024

• kct-walk

  Public
  k-mer walking with kct. Extends a seed without needing to come back to a reference.

  Julia

  •0•0•0•0•Updated Jul 1, 2024Jul 1, 2024

• coxph_dimensions

  Public
  Julia

  •0•0•0•0•Updated Apr 17, 2024Apr 17, 2024

• vae_cox

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Mar 4, 2024Mar 4, 2024

• MTL_cancer_GE

  Public
  Julia

  •0•0•0•0•Updated Dec 5, 2023Dec 5, 2023

• BiDRA_V2

  Public
  Bayesian inference for Dose-Response Analysis version 2.0

  Julia

  •0•0•0•0•Updated Sep 11, 2023Sep 11, 2023

• leonard_associative_networks

  Public
  Julia

  •0•0•0•0•Updated May 14, 2023May 14, 2023

• leonard_leucegene_factorized_embeddings

  Public
  Julia

  •0•0•0•0•Updated May 10, 2023May 10, 2023

• nicolas_s2021

  Public
  This repo will be used to store most of the code I make during my internship (summer 2021)

  Julia

  •0•1•0•0•Updated Apr 20, 2023Apr 20, 2023

• leonard_gene_signatures

  Public
  Julia

  •0•0•0•0•Updated Feb 6, 2023Feb 6, 2023

• dimensions_coxph

  Public
  Python

  •0•0•1•0•Updated Nov 28, 2022Nov 28, 2022

• Leonard-Leucegene-Shared

  Public
  Python

  •0•0•0•0•Updated Nov 16, 2022Nov 16, 2022

• Ribo-db

  Public
  Jupyter Notebook

  •1•1•1•0•Updated Jul 16, 2020Jul 16, 2020

• BiDRA

  Public
  HTML

  •0•1•0•0•Updated May 4, 2020May 4, 2020

• kmers-primer

  Public
  Still undefined project to learn Julia + BioJulia + Flux

  Julia

  •0•0•0•0•Updated Apr 23, 2020Apr 23, 2020

• myCircos

  Public
  myCircos web interface code

  HTML

  •1•1•0•0•Updated Sep 5, 2019Sep 5, 2019

• Jellyfish

  Public
  A fast multi-threaded k-mer counter

  C++

  •

  GNU General Public License v3.0

  •137•0•0•0•Updated Mar 27, 2014Mar 27, 2014