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    11 repositories

    • rnakinet

      Public
      RNAkinet: Detect 5eu-modified reads directly from the raw nanopore sequencing signal to quantify RNA kinetics
      Python
      •
      Other
      •0•4•1•0•Updated Feb 15, 2025Feb 15, 2025

    • lab-tools

      Public
      Scripts for processing low-throughput molecular biology data
      R
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • nanoplen

      Public
      Package for the analysis of the nanopore read lengths, e.g. to calculate the significant differential transcript length.
      R
      •
      Other
      •1•1•0•0•Updated Dec 12, 2024Dec 12, 2024

    • tabletools

      Public
      Miscellaneous scripts for manipulating table files
      Python
      •
      Other
      •5•0•0•0•Updated Sep 27, 2024Sep 27, 2024

    • rnakinet-pub

      Public
      Python
      •
      Other
      •0•1•0•0•Updated Aug 29, 2024Aug 29, 2024

    • samql

      Public
      SQL-like query language for the SAM/BAM file format
      gobioinformaticssequencingsambamsql
      Go
      •
      MIT License
      •5•28•0•0•Updated Sep 20, 2023Sep 20, 2023

    • Hackathon202305

      Public
      Our first hackathon! Training for mRNA decay rates
      Jupyter Notebook
      •1•0•0•0•Updated May 24, 2023May 24, 2023

    • senescence-omics

      Public
      Source code for manuscript "Senescence-specific translation dysregulation desensitizes cells to stress by inhibiting activation of the integrated stress response"
      R
      •0•0•0•0•Updated Apr 20, 2023Apr 20, 2023

    • mouse_liver

      Public
      Collaboration with Payel Sen
      Python
      •
      Other
      •1•0•0•0•Updated Dec 15, 2022Dec 15, 2022

    • bioutils

      Public
      Standalone utility scripts for bioinformatics
      Perl
      •4•1•0•0•Updated Feb 28, 2022Feb 28, 2022

    • samutils

      Public
      Standalone utility scripts for manipulating SAM files
      Perl
      •2•0•0•0•Updated Dec 10, 2020Dec 10, 2020