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    220 repositories

    • BMH-admin-portal

      Public
      Shared Codebase for the Biomedical Research Hub Initiative
      Python
      •
      Apache License 2.0
      •2•0•0•8•Updated Mar 13, 2025Mar 13, 2025

    • cohort-middleware

      Public
      Middleware to work with Atlas cohorts in Gen3
      vadc
      Go
      •
      Apache License 2.0
      •1•1•0•4•Updated Mar 13, 2025Mar 13, 2025

    • hatchery

      Public
      hacktoberfestgen3
      Go
      •
      Apache License 2.0
      •4•7•0•7•Updated Mar 13, 2025Mar 13, 2025

    • ssjdispatcher

      Public
      SQS S3 Job Dispatcher
      Go
      •
      Apache License 2.0
      •5•3•0•1•Updated Mar 13, 2025Mar 13, 2025

    • aws-es-proxy

      Public
      aws-es-proxy is a small web server application sitting between your HTTP client (browser, curl, etc...) and Amazon Elasticsearch service.
      Go
      •
      Apache License 2.0
      •202•1•0•1•Updated Mar 13, 2025Mar 13, 2025

    • sower

      Public
      Job dispatcher for Kubernetes
      gen3
      Go
      •
      Apache License 2.0
      •2•4•0•1•Updated Mar 13, 2025Mar 13, 2025

    • sheepdog

      Public
      API for herding data submissions
      gen3
      Python
      •
      Apache License 2.0
      •18•11•22•18•Updated Mar 13, 2025Mar 13, 2025

    • gen3-code-vigil

      Public
      Gen3 Testing
      Python
      •
      Apache License 2.0
      •2•2•0•9•Updated Mar 13, 2025Mar 13, 2025

    • cdis-manifest

      Public
      Manifests tracking service versions to release to each environment
      HTML
      •
      Apache License 2.0
      •9•8•0•204•Updated Mar 13, 2025Mar 13, 2025

    • gitops-qa

      Public
      gen3-gitops
      HTML
      •
      Apache License 2.0
      •7•2•0•189•Updated Mar 12, 2025Mar 12, 2025

    • heal-data-commons

      Public
      TypeScript
      •
      Apache License 2.0
      •0•1•0•5•Updated Mar 12, 2025Mar 12, 2025

    • vadc-data-commons

      Public template
      VADC Gen3 Data Commons repository for gen3 frontend framework
      JavaScript
      •
      Apache License 2.0
      •21•0•0•2•Updated Mar 12, 2025Mar 12, 2025

    • Viewers

      Public
      OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
      TypeScript
      •
      MIT License
      •3.6k•1•0•40•Updated Mar 12, 2025Mar 12, 2025

    • cloud-automation

      Public
      Automation for standing up Gen3 commons
      gen3
      Shell
      •
      Apache License 2.0
      •68•44•99•98•Updated Mar 12, 2025Mar 12, 2025

    • gen3-statics

      Public
      TypeScript
      •
      Apache License 2.0
      •0•0•0•6•Updated Mar 12, 2025Mar 12, 2025

    • NIEHS-data-commons

      Public template
      NIEHS Data Commons Gen3 web application
      TypeScript
      •
      Apache License 2.0
      •21•0•0•5•Updated Mar 12, 2025Mar 12, 2025

    • gen3-auspice

      Public
      Web app for visualizing pathogen evolution
      JavaScript
      •
      GNU Affero General Public License v3.0
      •166•0•0•49•Updated Mar 12, 2025Mar 12, 2025

    • heal-platform-sdk

      Public
      Python
      •
      Apache License 2.0
      •0•1•0•4•Updated Mar 12, 2025Mar 12, 2025

    • gen3-terraform

      Public
      HCL
      •
      Apache License 2.0
      •0•1•0•9•Updated Mar 12, 2025Mar 12, 2025

    • gen3-frontend-framework

      Public
      A Frontend Framework for Gen3 data portals
      TypeScript
      •
      Apache License 2.0
      •8•2•0•5•Updated Mar 12, 2025Mar 12, 2025

    • prometheus-data-platform

      Public template
      Gen3 based UI for Prometheus Data Platform
      TypeScript
      •
      Apache License 2.0
      •21•0•0•4•Updated Mar 12, 2025Mar 12, 2025

    • dcf-dataservice

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•22•Updated Mar 12, 2025Mar 12, 2025

    • containers

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •7•1•0•82•Updated Mar 12, 2025Mar 12, 2025

    • guppy

      Public
      Server that supports GraphQL queries on data from Elasticsearch
      gen3
      JavaScript
      •
      Apache License 2.0
      •12•7•1•10•Updated Mar 12, 2025Mar 12, 2025

    • data-portal

      Public
      Windmill: data portal for metadata submission and query
      gen3
      JavaScript
      •
      Apache License 2.0
      •48•29•43•18•Updated Mar 12, 2025Mar 12, 2025

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •141•0•0•3•Updated Mar 12, 2025Mar 12, 2025

    • ACCESS

      Public
      ACCESS - Adding Consortium ConstituEntS for Studies Frontend
      JavaScript
      •
      Apache License 2.0
      •0•0•0•38•Updated Mar 12, 2025Mar 12, 2025

    • django-DefectDojo

      Public
      DevSecOps, ASPM, Vulnerability Management. All on one platform.
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •1.6k•0•0•5•Updated Mar 12, 2025Mar 12, 2025

    • gen3-ui-component

      Public
      Base UI component in gen3
      JavaScript
      •
      Apache License 2.0
      •2•3•2•14•Updated Mar 12, 2025Mar 12, 2025

    • docs-gen3

      Public
      Repository for Public Gen3 Technical Documentation
      HTML
      •
      Apache License 2.0
      •3•1•0•1•Updated Mar 12, 2025Mar 12, 2025