tests: Fix test assertion #61
Workflow file for this run
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| name: main | |
| on: | |
| push: | |
| branches: [main] | |
| pull_request: | |
| branches: [main] | |
| jobs: | |
| check-branch: | |
| if: ${{ github.event_name == 'pull_request' }} | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| concurrency: | |
| group: check-pr-${{ github.ref }} | |
| cancel-in-progress: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check if the PR's branch is updated | |
| uses: osl-incubator/gh-check-pr-is-updated@1.0.0 | |
| with: | |
| remote_branch: origin/main | |
| pr_sha: ${{ github.event.pull_request.head.sha }} | |
| tests: | |
| needs: check-branch | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python_version: | |
| - "3.9" | |
| - "3.10" | |
| - "3.11" | |
| - "3.12" | |
| os: | |
| - "ubuntu" | |
| # - 'macos' | |
| # poetry is failing on windows: https://github.com/python-poetry/poetry/issues/1031 | |
| # - 'windows' | |
| runs-on: ${{ matrix.os }}-latest | |
| timeout-minutes: 10 | |
| concurrency: | |
| group: ci-tests-${{ matrix.os }}-${{ matrix.python_version }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: "latest" | |
| environment-file: conda/dev.yaml | |
| channels: conda-forge,nodefaults | |
| activate-environment: pymedx | |
| auto-update-conda: true | |
| conda-solver: libmamba | |
| python-version: "${{ matrix.python_version }}" | |
| - name: Install dependencies | |
| run: | | |
| poetry install | |
| - name: Create .env file | |
| env: | |
| NCBI_API_KEY: ${{ secrets.NCBI_API_KEY }} | |
| SERVICE_EMAIL: ${{ secrets.SERVICE_EMAIL }} | |
| run: | | |
| pushd tests | |
| envsubst < .env.tpl > .env | |
| popd | |
| - name: Run tests | |
| env: | |
| NCBI_API_KEY: ${{ secrets.NCBI_API_KEY }} | |
| SERVICE_EMAIL: ${{ secrets.SERVICE_EMAIL }} | |
| run: makim tests.unittest | |
| linter-and-docs: | |
| needs: check-branch | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 10 | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| concurrency: | |
| group: ci-linter-docs-${{ matrix.os }}-${{ matrix.python_version }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniconda-version: "latest" | |
| environment-file: conda/dev.yaml | |
| channels: conda-forge,nodefaults | |
| activate-environment: pymedx | |
| auto-update-conda: true | |
| conda-solver: libmamba | |
| python-version: "3.12" | |
| - name: Install dependencies | |
| run: | | |
| poetry config virtualenvs.create false | |
| poetry install | |
| - name: Test documentation generation | |
| run: makim docs.build | |
| - name: Run style checks | |
| if: success() || failure() | |
| run: | | |
| pre-commit install | |
| makim tests.linter | |
| - name: Setup tmate session | |
| if: "${{ failure() && (contains(github.event.pull_request.labels.*.name, 'ci:enable-debugging')) }}" | |
| uses: mxschmitt/action-tmate@v3 |