fix docs

docs/SFPPy_classes_documentation.md

@@ -1,14 +1,14 @@
 # SFPPy Modules Documentation
 
-Generated on: **2025-02-27 14:44:38**
+Generated on: **2025-02-27 15:44:53**
 
 <hr style="border: none; height: 1px; background-color: #e0e0e0;" />
 
 
 ## **Running SFPPy**
 
 > **SFPPy** enables the **compliance assessment of food contact materials** and facilitates **risk assessments** through **migration modeling**.  
-> The term *"[Migration Modeling]("./MigrationModeling/")"* refers to the **simulation of mass transfer** (primarily diffusive) from packaging materials into food.
+> The term *"[Migration Modeling]("MigrationModeling/")"* refers to the **simulation of mass transfer** (primarily diffusive) from packaging materials into food.
 
 #### **What this guide covers:**
 1. **Running SFPPy/example1.py** (or `example2.py`, `example3.py`) immediately after cloning the repository.
@@ -22,7 +22,7 @@ For the best experience, we recommend using [Jupyter](https://docs.jupyter.org/e
 ### **📌 Prerequisites**
 Before running SFPPy, make sure you have:
 
-✅ **A basic understanding of Migration Modeling** → Read this [document]("./MigrationModeling/").  
+✅ **A basic understanding of Migration Modeling** → Read this [document]("MigrationModeling/").  
 ✅ **Python 3.x (≥3.8) installed**.  
 ✅ **Dependencies installed**:
    - If your Python distribution does **not include scientific libraries** (NumPy, SciPy, Matplotlib, Pandas), install them using:

docs/class_examples.html

@@ -336,7 +336,7 @@ <h2>Welcome to Usage Class Examples</h2>
 <p>Select a module in the left menu to view usage examples. These examples are not for production and are automatically extracted from the main section of each module.</p>
 <p>Back to the <a href='index.html'>Python'SFPPy documentation</a>.</p>
 <p>When no module is selected, you see this welcome page. They are used to test classes with typical codes. The main section often serves as a testing script, example usage block, or self-contained test block. It's a way to demonstrate how the module's functionality works or to run simple unit tests and examples inline.</p>
-<p>Generated on: 2025-02-27 14:44:38</p>
+<p>Generated on: 2025-02-27 15:44:53</p>
 
 </div>
 

docs/index.html

@@ -303,7 +303,7 @@
     <div id="notification-banner" class="notification-banner">
         <span>
             If you are looking for the concepts of migration modeling and risk assessment, please follow this 
-            <a href="./MigrationModeling/" target="_book">link</a>.
+            <a href="MigrationModeling/" target="_book">link</a>.
         </span>
         <button class="close-button" onclick="closeBanner()">&times;</button>
     </div>
@@ -371,15 +371,15 @@ <h2>Welcome to SFPPy Documentation</h2>
                 const markdownContent = `
 # SFPPy Modules Documentation
 
-Generated on: **2025-02-27 14:44:38**
+Generated on: **2025-02-27 15:44:53**
 
 <hr style="border: none; height: 1px; background-color: #e0e0e0;" />
 
 
 ## **Running SFPPy**
 
 > **SFPPy** enables the **compliance assessment of food contact materials** and facilitates **risk assessments** through **migration modeling**.  
-> The term *"[Migration Modeling]("./MigrationModeling/")"* refers to the **simulation of mass transfer** (primarily diffusive) from packaging materials into food.
+> The term *"[Migration Modeling]("MigrationModeling/")"* refers to the **simulation of mass transfer** (primarily diffusive) from packaging materials into food.
 
 #### **What this guide covers:**
 1. **Running SFPPy/example1.py** (or \`example2.py\`, \`example3.py\`) immediately after cloning the repository.
@@ -393,7 +393,7 @@ <h2>Welcome to SFPPy Documentation</h2>
 ### **📌 Prerequisites**
 Before running SFPPy, make sure you have:
 
-✅ **A basic understanding of Migration Modeling** → Read this [document]("./MigrationModeling/").  
+✅ **A basic understanding of Migration Modeling** → Read this [document]("MigrationModeling/").  
 ✅ **Python 3.x (≥3.8) installed**.  
 ✅ **Dependencies installed**:
    - If your Python distribution does **not include scientific libraries** (NumPy, SciPy, Matplotlib, Pandas), install them using:

docs/index_matlab.html

@@ -249,7 +249,7 @@ <h2>Welcome to Pizza3 Matlab Documentation</h2>
 <p>Back to the <a href='index.html'>Python'Pizza3 documentation</a>.</p>
 <hr>
 <p><i>When no function is selected, you see this welcome page.</i></p>
-Generated on: 2025-02-27 14:44:37</div>
+Generated on: 2025-02-27 15:44:53</div>
 <div id='testcase' class='doc-content' style='display: none;'>
 <h1>reference system</h1>
 <button class="collapsible">Show MATLAB Code</button>

docs/patankar/migration.html

@@ -2498,7 +2498,7 @@ <h2 id="returns">Returns</h2>
 </details>
 </dd>
 <dt id="migration.senspatankar"><code class="name flex">
-<span>def <span class="ident">senspatankar</span></span>(<span>multilayer=None, medium=None, name='senspatantkar:9HhMmN', description='', t=None, autotime=True, timescale='sqrt', Cxprevious=None, ntimes=1000.0, RelTol=1e-06, AbsTol=1e-06)</span>
+<span>def <span class="ident">senspatankar</span></span>(<span>multilayer=None, medium=None, name='senspatantkar:y1fCdu', description='', t=None, autotime=True, timescale='sqrt', Cxprevious=None, ntimes=1000.0, RelTol=1e-06, AbsTol=1e-06)</span>
 </code></dt>
 <dd>
 <div class="desc"><p>Simulates in 1D the mass transfer of a substance initially distributed in a multilayer

docs/patankar/migration.html~

@@ -2498,7 +2498,7 @@ Cfull_dimless (np.ndarray): Full concentration profile.</p></div>
 </details>
 </dd>
 <dt id="migration.senspatankar"><code class="name flex">
-<span>def <span class="ident">senspatankar</span></span>(<span>multilayer=None, medium=None, name='senspatantkar:9HhMmN', description='', t=None, autotime=True, timescale='sqrt', Cxprevious=None, ntimes=1000.0, RelTol=1e-06, AbsTol=1e-06)</span>
+<span>def <span class="ident">senspatankar</span></span>(<span>multilayer=None, medium=None, name='senspatantkar:y1fCdu', description='', t=None, autotime=True, timescale='sqrt', Cxprevious=None, ntimes=1000.0, RelTol=1e-06, AbsTol=1e-06)</span>
 </code></dt>
 <dd>
 <div class="desc"><p>Simulates in 1D the mass transfer of a substance initially distributed in a multilayer

docs/patankar/private/chemspipy/api.html

@@ -96,7 +96,7 @@
         <div style="border: 2px solid red; padding: 10px; margin-bottom: 20px;">
             <h3 style="color: red;">Notice</h3>
             <p>This is a raw view of the Python source code due to an error in generating the documentation.</p>
-            <p><strong>Date of Conversion:</strong> 2025-02-27 14:45:04</p>
+            <p><strong>Date of Conversion:</strong> 2025-02-27 15:45:19</p>
         </div>
 
 <h2></h2>

docs/patankar/private/chemspipy/objects.html

@@ -96,7 +96,7 @@
         <div style="border: 2px solid red; padding: 10px; margin-bottom: 20px;">
             <h3 style="color: red;">Notice</h3>
             <p>This is a raw view of the Python source code due to an error in generating the documentation.</p>
-            <p><strong>Date of Conversion:</strong> 2025-02-27 14:45:04</p>
+            <p><strong>Date of Conversion:</strong> 2025-02-27 15:45:19</p>
         </div>
 
 <h2></h2>

docs/patankar/private/chemspipy/search.html

@@ -96,7 +96,7 @@
         <div style="border: 2px solid red; padding: 10px; margin-bottom: 20px;">
             <h3 style="color: red;">Notice</h3>
             <p>This is a raw view of the Python source code due to an error in generating the documentation.</p>
-            <p><strong>Date of Conversion:</strong> 2025-02-27 14:45:04</p>
+            <p><strong>Date of Conversion:</strong> 2025-02-27 15:45:19</p>
         </div>
 
 <h2></h2>

docs/setup.html

@@ -96,7 +96,7 @@
         <div style="border: 2px solid red; padding: 10px; margin-bottom: 20px;">
             <h3 style="color: red;">Notice</h3>
             <p>This is a raw view of the Python source code due to an error in generating the documentation.</p>
-            <p><strong>Date of Conversion:</strong> 2025-02-27 14:45:05</p>
+            <p><strong>Date of Conversion:</strong> 2025-02-27 15:45:20</p>
         </div>
 
 <h2></h2>