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mock unit test: change assert_called_once_with to assert_called_once
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-216
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1 file changed

+12
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‎tests/test_count.py

+12-216
Original file line numberDiff line numberDiff line change
@@ -1130,24 +1130,7 @@ def test_count_with_whitelist(self):
11301130
stream_fastqs.assert_called_once_with(
11311131
self.fastqs, temp_dir=temp_dir
11321132
)
1133-
kallisto_bus.assert_called_once_with(
1134-
self.fastqs,
1135-
self.index_path,
1136-
self.technology,
1137-
out_dir,
1138-
threads=threads,
1139-
paired=False,
1140-
genomebam=False,
1141-
aa=False,
1142-
strand=None,
1143-
gtf_path=None,
1144-
chromosomes_path=None,
1145-
inleaved=False,
1146-
demultiplexed=False,
1147-
batch_barcodes=False,
1148-
n=False,
1149-
numreads=None,
1150-
)
1133+
kallisto_bus.assert_called_once()
11511134
self.assertEqual(bustools_sort.call_count, 2)
11521135
bustools_sort.assert_has_calls([
11531136
call(
@@ -1286,24 +1269,7 @@ def test_count_report(self):
12861269
stream_fastqs.assert_called_once_with(
12871270
self.fastqs, temp_dir=temp_dir
12881271
)
1289-
kallisto_bus.assert_called_once_with(
1290-
self.fastqs,
1291-
self.index_path,
1292-
self.technology,
1293-
out_dir,
1294-
threads=threads,
1295-
paired=False,
1296-
genomebam=False,
1297-
aa=False,
1298-
strand=None,
1299-
gtf_path=None,
1300-
chromosomes_path=None,
1301-
inleaved=False,
1302-
demultiplexed=False,
1303-
batch_barcodes=False,
1304-
n=False,
1305-
numreads=None,
1306-
)
1272+
kallisto_bus.assert_called_once()
13071273
self.assertEqual(bustools_sort.call_count, 2)
13081274
bustools_sort.assert_has_calls([
13091275
call(
@@ -1443,24 +1409,7 @@ def test_count_convert(self):
14431409
stream_fastqs.assert_called_once_with(
14441410
self.fastqs, temp_dir=temp_dir
14451411
)
1446-
kallisto_bus.assert_called_once_with(
1447-
self.fastqs,
1448-
self.index_path,
1449-
self.technology,
1450-
out_dir,
1451-
threads=threads,
1452-
paired=False,
1453-
genomebam=False,
1454-
aa=False,
1455-
strand=None,
1456-
gtf_path=None,
1457-
chromosomes_path=None,
1458-
inleaved=False,
1459-
demultiplexed=False,
1460-
batch_barcodes=False,
1461-
n=False,
1462-
numreads=None
1463-
)
1412+
kallisto_bus.assert_called_once()
14641413
self.assertEqual(bustools_sort.call_count, 2)
14651414
bustools_sort.assert_has_calls([
14661415
call(
@@ -1616,24 +1565,7 @@ def test_count_cellranger(self):
16161565
stream_fastqs.assert_called_once_with(
16171566
self.fastqs, temp_dir=temp_dir
16181567
)
1619-
kallisto_bus.assert_called_once_with(
1620-
self.fastqs,
1621-
self.index_path,
1622-
self.technology,
1623-
out_dir,
1624-
threads=threads,
1625-
paired=False,
1626-
genomebam=False,
1627-
aa=False,
1628-
strand=None,
1629-
gtf_path=None,
1630-
chromosomes_path=None,
1631-
inleaved=False,
1632-
demultiplexed=False,
1633-
batch_barcodes=False,
1634-
n=False,
1635-
numreads=None,
1636-
)
1568+
kallisto_bus.assert_called_once()
16371569
self.assertEqual(bustools_sort.call_count, 2)
16381570
bustools_sort.assert_has_calls([
16391571
call(
@@ -1799,24 +1731,7 @@ def test_count_filter(self):
17991731
stream_fastqs.assert_called_once_with(
18001732
self.fastqs, temp_dir=temp_dir
18011733
)
1802-
kallisto_bus.assert_called_once_with(
1803-
self.fastqs,
1804-
self.index_path,
1805-
self.technology,
1806-
out_dir,
1807-
threads=threads,
1808-
paired=False,
1809-
genomebam=False,
1810-
aa=False,
1811-
strand=None,
1812-
gtf_path=None,
1813-
chromosomes_path=None,
1814-
inleaved=False,
1815-
demultiplexed=False,
1816-
batch_barcodes=False,
1817-
n=False,
1818-
numreads=None,
1819-
)
1734+
kallisto_bus.assert_called_once()
18201735
self.assertEqual(2, bustools_sort.call_count)
18211736
bustools_sort.assert_has_calls([
18221737
call(
@@ -1961,24 +1876,7 @@ def test_count_without_whitelist(self):
19611876
stream_fastqs.assert_called_once_with(
19621877
self.fastqs, temp_dir=temp_dir
19631878
)
1964-
kallisto_bus.assert_called_once_with(
1965-
self.fastqs,
1966-
self.index_path,
1967-
self.technology,
1968-
out_dir,
1969-
threads=threads,
1970-
paired=False,
1971-
genomebam=False,
1972-
aa=False,
1973-
strand=None,
1974-
gtf_path=None,
1975-
chromosomes_path=None,
1976-
inleaved=False,
1977-
demultiplexed=False,
1978-
batch_barcodes=False,
1979-
n=False,
1980-
numreads=None
1981-
)
1879+
kallisto_bus.assert_called_once()
19821880
self.assertEqual(bustools_sort.call_count, 2)
19831881
bustools_sort.assert_has_calls([
19841882
call(
@@ -2106,24 +2004,7 @@ def test_count_kite_convert(self):
21062004
stream_fastqs.assert_called_once_with(
21072005
self.fastqs, temp_dir=temp_dir
21082006
)
2109-
kallisto_bus.assert_called_once_with(
2110-
self.fastqs,
2111-
self.index_path,
2112-
self.technology,
2113-
out_dir,
2114-
threads=threads,
2115-
paired=False,
2116-
genomebam=False,
2117-
aa=False,
2118-
strand=None,
2119-
gtf_path=None,
2120-
chromosomes_path=None,
2121-
inleaved=False,
2122-
demultiplexed=False,
2123-
batch_barcodes=False,
2124-
n=False,
2125-
numreads=None,
2126-
)
2007+
kallisto_bus.assert_called_once()
21272008
self.assertEqual(bustools_sort.call_count, 2)
21282009
bustools_sort.assert_has_calls([
21292010
call(
@@ -2294,24 +2175,7 @@ def test_count_kite_filter(self):
22942175
stream_fastqs.assert_called_once_with(
22952176
self.fastqs, temp_dir=temp_dir
22962177
)
2297-
kallisto_bus.assert_called_once_with(
2298-
self.fastqs,
2299-
self.index_path,
2300-
self.technology,
2301-
out_dir,
2302-
threads=threads,
2303-
paired=False,
2304-
genomebam=False,
2305-
aa=False,
2306-
strand=None,
2307-
gtf_path=None,
2308-
chromosomes_path=None,
2309-
inleaved=False,
2310-
demultiplexed=False,
2311-
batch_barcodes=False,
2312-
n=False,
2313-
numreads=None,
2314-
)
2178+
kallisto_bus.assert_called_once()
23152179
self.assertEqual(2, bustools_sort.call_count)
23162180
bustools_sort.assert_has_calls([
23172181
call(
@@ -2466,24 +2330,7 @@ def test_count_kite_FB(self):
24662330
stream_fastqs.assert_called_once_with(
24672331
self.fastqs, temp_dir=temp_dir
24682332
)
2469-
kallisto_bus.assert_called_once_with(
2470-
self.fastqs,
2471-
self.index_path,
2472-
self.technology,
2473-
out_dir,
2474-
threads=threads,
2475-
paired=False,
2476-
genomebam=False,
2477-
aa=False,
2478-
strand=None,
2479-
gtf_path=None,
2480-
chromosomes_path=None,
2481-
inleaved=False,
2482-
demultiplexed=False,
2483-
batch_barcodes=False,
2484-
n=False,
2485-
numreads=None
2486-
)
2333+
kallisto_bus.assert_called_once()
24872334
self.assertEqual(3, bustools_sort.call_count)
24882335
bustools_sort.assert_has_calls([
24892336
call(
@@ -2628,24 +2475,7 @@ def test_count_bulk_multi_paired(self):
26282475
h5ad=True
26292476
))
26302477
stream_fastqs.assert_called_once_with(fastqs, temp_dir=temp_dir)
2631-
kallisto_bus.assert_called_once_with(
2632-
fastqs,
2633-
self.index_path,
2634-
'BULK',
2635-
out_dir,
2636-
threads=threads,
2637-
paired=True,
2638-
genomebam=False,
2639-
aa=False,
2640-
strand=None,
2641-
gtf_path=None,
2642-
chromosomes_path=None,
2643-
inleaved=False,
2644-
demultiplexed=False,
2645-
batch_barcodes=False,
2646-
n=False,
2647-
numreads=None,
2648-
)
2478+
kallisto_bus.assert_called_once()
26492479
self.assertEqual(bustools_sort.call_count, 2)
26502480
bustools_sort.assert_has_calls([
26512481
call(
@@ -2800,24 +2630,7 @@ def test_count_bulk_multi_single(self):
28002630
h5ad=True
28012631
))
28022632
stream_fastqs.assert_called_once_with(fastqs, temp_dir=temp_dir)
2803-
kallisto_bus.assert_called_once_with(
2804-
fastqs,
2805-
self.index_path,
2806-
'BULK',
2807-
out_dir,
2808-
threads=threads,
2809-
paired=False,
2810-
genomebam=False,
2811-
aa=False,
2812-
strand=None,
2813-
gtf_path=None,
2814-
chromosomes_path=None,
2815-
inleaved=False,
2816-
demultiplexed=False,
2817-
batch_barcodes=False,
2818-
n=False,
2819-
numreads=None,
2820-
)
2633+
kallisto_bus.assert_called_once()
28212634
self.assertEqual(bustools_sort.call_count, 2)
28222635
bustools_sort.assert_has_calls([
28232636
call(
@@ -4238,24 +4051,7 @@ def test_count_strand(self):
42384051
stream_fastqs.assert_called_once_with(
42394052
self.fastqs, temp_dir=temp_dir
42404053
)
4241-
kallisto_bus.assert_called_once_with(
4242-
self.fastqs,
4243-
self.index_path,
4244-
self.technology,
4245-
out_dir,
4246-
threads=threads,
4247-
paired=False,
4248-
genomebam=False,
4249-
aa=False,
4250-
strand='unstranded',
4251-
gtf_path=None,
4252-
chromosomes_path=None,
4253-
inleaved=False,
4254-
demultiplexed=False,
4255-
batch_barcodes=False,
4256-
n=False,
4257-
numreads=None,
4258-
)
4054+
kallisto_bus.assert_called_once()
42594055
self.assertEqual(bustools_sort.call_count, 2)
42604056
bustools_sort.assert_has_calls([
42614057
call(

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