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Updating the README #11

Merged
merged 5 commits into from
Nov 9, 2023
Merged

Updating the README #11

merged 5 commits into from
Nov 9, 2023

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emarinier
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Updating the README to reflect changes made in #9.

@emarinier emarinier self-assigned this Nov 9, 2023
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github-actions bot commented Nov 9, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 9c3bd83

+| ✅ 156 tests passed       |+
#| ❔   2 tests were ignored |#
!| ❗  15 tests had warnings |!

❗ Test warnings:

  • readme - README did not have a Nextflow minimum version badge.
  • pipeline_todos - TODO string in nextflow.config: Specify your pipeline's command line flags
  • pipeline_todos - TODO string in ci.yml: You can customise CI pipeline run tests as required
  • pipeline_todos - TODO string in awsfulltest.yml: You can customise AWS full pipeline tests as required
  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your preferred methods description, e.g. add publication citation for this pipeline
  • pipeline_todos - TODO string in test_full.config: Specify the paths to your full test data ( on nf-core/test-datasets or directly in repositories, e.g. SRA)
  • pipeline_todos - TODO string in test_full.config: Give any required params for the test so that command line flags are not needed
  • pipeline_todos - TODO string in test.config: Specify the paths to your test data on nf-core/test-datasets
  • pipeline_todos - TODO string in test.config: Give any required params for the test so that command line flags are not needed
  • pipeline_todos - TODO string in base.config: Check the defaults for all processes
  • pipeline_todos - TODO string in base.config: Customise requirements for specific processes.
  • pipeline_todos - TODO string in output.md: Write this documentation describing your workflow's output
  • pipeline_todos - TODO string in usage.md: Add documentation about anything specific to running your pipeline. For general topics, please point to (and add to) the main nf-core website.
  • pipeline_todos - TODO string in WorkflowIridanext.groovy: Optionally add in-text citation tools to this list.
  • pipeline_todos - TODO string in WorkflowMain.groovy: Add Zenodo DOI for pipeline after first release

❔ Tests ignored:

  • files_unchanged - File ignored due to lint config: assets/sendmail_template.txt
  • files_unchanged - File ignored due to lint config: lib/NfcoreTemplate.groovy

✅ Tests passed:

Run details

  • nf-core/tools version 2.10
  • Run at 2023-11-09 17:38:20

@emarinier emarinier requested a review from apetkau November 9, 2023 17:39
apetkau
apetkau approved these changes Nov 9, 2023
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This looks amazing. Thanks so much Eric 😄

@apetkau apetkau merged commit d23c5b7 into dev Nov 9, 2023
@apetkau apetkau deleted the update/README branch November 9, 2023 18:35
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@apetkau apetkau apetkau approved these changes

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@emarinier @apetkau