adjust test location to point to dev

phac-nml · Jan 24, 2025 · b36358d · b36358d
1 parent 7f26c64
commit b36358d
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/assets/samplesheet.csv b/assets/samplesheet.csv
@@ -1,3 +1,3 @@
 sample,fastq_1,fastq_2
-sample1,https://github.com/phac-nml/legiovue/raw/add/iridanext-updates/tests/test_data/in1_R1.fastq.gz,https://github.com/phac-nml/legiovue/raw/add/iridanext-updates/tests/test_data/in1_R2.fastq.gz
-sample2,https://github.com/phac-nml/legiovue/raw/add/iridanext-updates/tests/test_data/in2_R1.fastq.gz,https://github.com/phac-nml/legiovue/raw/add/iridanext-updates/tests/test_data/in2_R2.fastq.gz
+sample1,https://github.com/phac-nml/legiovue/raw/dev/tests/test_data/in1_R1.fastq.gz,https://github.com/phac-nml/legiovue/raw/dev/tests/test_data/in1_R2.fastq.gz
+sample2,https://github.com/phac-nml/legiovue/raw/dev/tests/test_data/in2_R1.fastq.gz,https://github.com/phac-nml/legiovue/raw/dev/tests/test_data/in2_R2.fastq.gz
diff --git a/workflows/legiovue.nf b/workflows/legiovue.nf
@@ -20,10 +20,10 @@ include { CHEWBBACA_ALLELE_CALL             } from '../modules/local/chewbbaca.n
 include { CHEWBBACA_EXTRACT_CGMLST          } from '../modules/local/chewbbaca.nf'
 include { PYSAMSTATS as PYSAMSTATS_MAPQ     } from '../modules/local/pysamstats.nf'
 include { PYSAMSTATS as PYSAMSTATS_BASEQ    } from '../modules/local/pysamstats.nf'
-include { CSVTK_JOIN_ALLELE_STATS               } from '../modules/local/utils.nf'
+include { CSVTK_JOIN_ALLELE_STATS           } from '../modules/local/utils.nf'
 include { PLOT_EL_GATO_ALLELES              } from '../modules/local/plotting.nf'
 include { COMBINE_SAMPLE_DATA               } from '../modules/local/qc.nf'
-include { CSVTK_CONCAT_QC_DATA                     } from '../modules/local/utils.nf'
+include { CSVTK_CONCAT_QC_DATA              } from '../modules/local/utils.nf'
 include { CUSTOM_DUMPSOFTWAREVERSIONS       } from '../modules/nf-core/custom/dumpsoftwareversions/main'
 
 /*