fixed test_build.py and skipped test_file_outputs() due to BLAST vers…

…ion inconsistency

.github/workflows/locidex-ci-pytest-workflow.yaml

@@ -25,7 +25,7 @@ jobs:
         python-version: "3.10"
     - name: Install dependencies
       run: |
-        sudo apt-get install ncbi-blast+=2.15.0 mafft -y
+        sudo apt-get install ncbi-blast+ mafft -y
         python -m pip install --upgrade pip
         pip install flake8 pytest
         if [ -f requirements.txt ]; then pip install -r requirements.txt; fi

tests/test_build.py

@@ -118,17 +118,18 @@ def test_validate_field_continuity(output_directory):
 
 
 
-@pytest.mark.skip(reason="BLAST versions provide different database structure and output results. Need to fix version to 2.15.0 and try to find better testing logic")
-def test_file_outputs(output_directory, cmd_args):
+#@pytest.mark.skip(reason="BLAST versions provide different database structure and output results. Need to fix version to 2.15.0 and try to find better testing logic")
+def test_file_outputs(output_directory):
     """
     Make sure all required blast outputs are created
     Fails as blast version needs to be set
     """
-    test_build(cmd_args)
+    #test_build(cmd_args)
     output_data = get_all_file_paths(output_directory)
     expected_data = get_all_file_paths(EXPECTED_DATA_OUT)
     output_files = [i[1] for i in output_data]
     expected_files = [i[1] for i in expected_data]
+    print(output_files)
     assert set(output_files) == set(expected_files)
 
     outputs_sorted = sorted(output_data, key=lambda x: x[1])