From 34af1793d8db2ff1216b88b22e9ba97ffb5b23cc Mon Sep 17 00:00:00 2001 From: Kirill Bessonov Date: Wed, 4 Sep 2024 02:10:00 -0400 Subject: [PATCH] python 3.10 for CI --- .github/workflows/github-actions.yaml | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/.github/workflows/github-actions.yaml b/.github/workflows/github-actions.yaml index be2c870..f824b40 100644 --- a/.github/workflows/github-actions.yaml +++ b/.github/workflows/github-actions.yaml @@ -27,10 +27,11 @@ jobs: run: | sudo apt-get update sudo apt-get install mash ncbi-blast+ libssl-dev libcurl4-openssl-dev mafft libssl-dev ca-certificates -y - sudo apt-get install python3-pip python3-dev python3-pandas python3-pycurl python3-biopython -y + sudo apt-get install python3-pip python3-dev python3-pandas python3-biopython -y python3 -m pip install --upgrade pip setuptools - pip3 install pytest fastcluster openpyxl - pip3 install . + pip3 install pytest fastcluster openpyxl pycurl + python3 -c "import pycurl" + python setup.py install - name: Test with pytest run: | pytest -o log_cli=true --basetemp=tmp-pytest