diff --git a/.github/workflows/github-actions.yaml b/.github/workflows/github-actions.yaml index e86921d..da36b08 100644 --- a/.github/workflows/github-actions.yaml +++ b/.github/workflows/github-actions.yaml @@ -27,10 +27,11 @@ jobs: run: | sudo apt-get update sudo apt-get install mash ncbi-blast+ libssl-dev libcurl4-openssl-dev mafft libssl-dev ca-certificates -y - sudo apt-get install python3-pip python3-dev python3-pandas python3-requests python3-biopython -y + sudo apt-get install python3-pip python3-dev python3-pandas python3-pycurl python3-biopython -y python3 -m pip install --upgrade pip setuptools - pip3 install pytest fastcluster openpyxl pycurl + pip3 install pytest fastcluster openpyxl pip3 install -e . + sistr_init - name: Test with pytest run: | pytest -o log_cli=true --basetemp=tmp-pytest