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…o-turbo feat: migrate to turbo
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| # Changesets | ||
|
|
||
| Hello and welcome! This folder has been automatically generated by `@changesets/cli`, a build tool that works | ||
| with multi-package repos, or single-package repos to help you version and publish your code. You can | ||
| find the full documentation for it [in our repository](https://github.com/changesets/changesets) | ||
|
|
||
| We have a quick list of common questions to get you started engaging with this project in | ||
| [our documentation](https://github.com/changesets/changesets/blob/main/docs/common-questions.md) |
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| { | ||
| "$schema": "https://unpkg.com/@changesets/config@3.0.2/schema.json", | ||
| "changelog": "@changesets/cli/changelog", | ||
| "commit": false, | ||
| "fixed": [], | ||
| "linked": [], | ||
| "access": "restricted", | ||
| "baseBranch": "main", | ||
| "updateInternalDependencies": "patch", | ||
| "ignore": [] | ||
| } |
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| --- | ||
| "@platforma-open/milaboratories.genome-assets": minor | ||
| --- | ||
|
|
||
| feat: move to build with turbo |
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| /downloads/ | ||
| /indexed_genome/ | ||
| /pkg-*.tgz | ||
| /pkg-*.zip | ||
| /node_modules/ | ||
| downloads/ | ||
| indexed_genome/ | ||
| build/ | ||
| dist/ | ||
| .turbo | ||
| node_modules/ | ||
| pkg-*.tgz | ||
| pkg-*.zip | ||
| package.sw.json |
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| { | ||
| "Arabidopsis_thaliana": { | ||
| "assembly_version": "TAIR10", | ||
| "read_length": 75, | ||
| "genomeSAindexNbases": 12, | ||
| "genome_url": "https://ftp.ebi.ac.uk/ensemblgenomes/pub/release-60/plants/fasta/arabidopsis_thaliana/dna/Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.gz", | ||
| "gtf_url": "https://ftp.ebi.ac.uk/ensemblgenomes/pub/release-60/plants/gtf/arabidopsis_thaliana/Arabidopsis_thaliana.TAIR10.60.gtf.gz" | ||
| } | ||
| } |
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| { | ||
| "name": "@platforma-open/milaboratories.genome-assets.arabidopsis-thaliana", | ||
| "version": "1.0.0", | ||
| "description": "Assets for Arabidopsis Thaliana", | ||
| "scripts": { | ||
| "cleanup": "rm -rf ./pkg-*.tgz && rm -rf ./build/ && rm -rf ./dist/", | ||
| "build": "../build-everything.sh ./genomeFileUrls.json", | ||
| "postbuild": "pl-pkg build && ([ -z \"${CI}\" ] || pl-pkg publish)" | ||
| }, | ||
| "block-software": { | ||
| "entrypoints": { | ||
| "main": { | ||
| "asset": { | ||
| "type": "asset", | ||
| "registry": "platforma-open", | ||
| "root": "./indexed_genome/Arabidopsis_thaliana" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "files": [ | ||
| "dist/" | ||
| ], | ||
| "license": "UNLICENSED", | ||
| "devDependencies": { | ||
| "@platforma-sdk/package-builder": "catalog:" | ||
| } | ||
| } |
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| { | ||
| "Bos_taurus": { | ||
| "assembly_version": "ARS-UCD1.3", | ||
| "read_length": 150, | ||
| "genomeSAindexNbases": 14, | ||
| "genome_url": "https://ftp.ensembl.org/pub/release-113/fasta/bos_taurus/dna/Bos_taurus.ARS-UCD1.3.dna.toplevel.fa.gz", | ||
| "gtf_url": "https://ftp.ensembl.org/pub/release-113/gtf/bos_taurus/Bos_taurus.ARS-UCD1.3.113.gtf.gz" | ||
| } | ||
| } |
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| { | ||
| "name": "@platforma-open/milaboratories.genome-assets.bos-taurus", | ||
| "version": "1.0.0", | ||
| "description": "Assets for Bos Taurus", | ||
| "scripts": { | ||
| "cleanup": "rm -rf ./pkg-*.tgz && rm -rf ./build/ && rm -rf ./dist/", | ||
| "build": "../build-everything.sh ./genomeFileUrls.json", | ||
| "postbuild": "pl-pkg build && ([ -z \"${CI}\" ] || pl-pkg publish)" | ||
| }, | ||
| "block-software": { | ||
| "entrypoints": { | ||
| "main": { | ||
| "asset": { | ||
| "type": "asset", | ||
| "registry": "platforma-open", | ||
| "root": "./indexed_genome/Bos_taurus" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "files": [ | ||
| "dist/" | ||
| ], | ||
| "license": "UNLICENSED", | ||
| "devDependencies": { | ||
| "@platforma-sdk/package-builder": "catalog:" | ||
| } | ||
| } |
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| { | ||
| "Caenorhabditis_elegans": { | ||
| "assembly_version": "WBcel235", | ||
| "read_length": 100, | ||
| "genomeSAindexNbases": 12, | ||
| "genome_url": "https://ftp.ensembl.org/pub/release-113/fasta/caenorhabditis_elegans/dna/Caenorhabditis_elegans.WBcel235.dna.toplevel.fa.gz", | ||
| "gtf_url": "https://ftp.ensembl.org/pub/release-113/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.113.gtf.gz" | ||
| } | ||
| } |
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| { | ||
| "name": "@platforma-open/milaboratories.genome-assets.caenorhabditis-elegans", | ||
| "version": "1.0.0", | ||
| "description": "Assets for Caenorhabditis Elegans", | ||
| "scripts": { | ||
| "cleanup": "rm -rf ./pkg-*.tgz && rm -rf ./build/ && rm -rf ./dist/", | ||
| "build": "../build-everything.sh ./genomeFileUrls.json", | ||
| "postbuild": "pl-pkg build && ([ -z \"${CI}\" ] || pl-pkg publish)" | ||
| }, | ||
| "block-software": { | ||
| "entrypoints": { | ||
| "main": { | ||
| "asset": { | ||
| "type": "asset", | ||
| "registry": "platforma-open", | ||
| "root": "./indexed_genome/Caenorhabditis_elegans" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "files": [ | ||
| "dist/" | ||
| ], | ||
| "license": "UNLICENSED", | ||
| "devDependencies": { | ||
| "@platforma-sdk/package-builder": "catalog:" | ||
| } | ||
| } |
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| { | ||
|
|
||
| "name": "@platforma-open/milaboratories.genome-assets", | ||
| "version": "1.1.6", | ||
| "description": "STAR indexed genome references.", | ||
| "scripts": { | ||
| "cleanup": "rm -rf ./pkg-*.tgz && rm -rf ./dist/", | ||
| "build": "pl-pkg build" | ||
| }, | ||
| "block-software": { | ||
| "entrypoints": { | ||
| "test-species": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.test-species/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "sus-scrofa": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.sus-scrofa/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "saccharomyces-cerevisiae": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.saccharomyces-cerevisiae/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "rattus-norvegicus": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.rattus-norvegicus/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "mus-musculus": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.mus-musculus/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "homo-sapiens": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.homo-sapiens/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "gallus-gallus": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.gallus-gallus/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "drosophila-melanogaster": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.drosophila-melanogaster/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "danio-rerio": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.danio-rerio/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "caenorhabditis-elegans": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.caenorhabditis-elegans/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "bos-taurus": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.bos-taurus/dist/tengo/asset/main.as.json" | ||
| }, | ||
| "arabidopsis-thaliana": { | ||
| "reference": "@platforma-open/milaboratories.genome-assets.arabidopsis-thaliana/dist/tengo/asset/main.as.json" | ||
| } | ||
| } | ||
| }, | ||
| "files": [ | ||
| "dist/" | ||
| ], | ||
| "license": "UNLICENSED", | ||
| "dependencies": { | ||
| "@platforma-open/milaboratories.genome-assets.test-species": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.sus-scrofa": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.saccharomyces-cerevisiae": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.rattus-norvegicus": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.mus-musculus": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.homo-sapiens": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.gallus-gallus": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.drosophila-melanogaster": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.danio-rerio": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.caenorhabditis-elegans": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.bos-taurus": "workspace:*", | ||
| "@platforma-open/milaboratories.genome-assets.arabidopsis-thaliana": "workspace:*" | ||
| }, | ||
| "devDependencies": { | ||
| "@platforma-sdk/package-builder": "catalog:" | ||
| } | ||
| } |
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| { | ||
| "Danio_rerio": { | ||
| "assembly_version": "GRCz11", | ||
| "read_length": 150, | ||
| "genomeSAindexNbases": 14, | ||
| "genome_url": "https://ftp.ensembl.org/pub/release-113/fasta/danio_rerio/dna/Danio_rerio.GRCz11.dna.toplevel.fa.gz", | ||
| "gtf_url": "https://ftp.ensembl.org/pub/release-113/gtf/danio_rerio/Danio_rerio.GRCz11.113.gtf.gz" | ||
| } | ||
| } |
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| { | ||
| "name": "@platforma-open/milaboratories.genome-assets.danio-rerio", | ||
| "version": "1.0.0", | ||
| "description": "Assets for Danio Rerio", | ||
| "scripts": { | ||
| "cleanup": "rm -rf ./pkg-*.tgz && rm -rf ./build/ && rm -rf ./dist/", | ||
| "build": "../build-everything.sh ./genomeFileUrls.json", | ||
| "postbuild": "pl-pkg build && ([ -z \"${CI}\" ] || pl-pkg publish)" | ||
| }, | ||
| "block-software": { | ||
| "entrypoints": { | ||
| "main": { | ||
| "asset": { | ||
| "type": "asset", | ||
| "registry": "platforma-open", | ||
| "root": "./indexed_genome/Danio_rerio" | ||
| } | ||
| } | ||
| } | ||
| }, | ||
| "files": [ | ||
| "dist/" | ||
| ], | ||
| "license": "UNLICENSED", | ||
| "devDependencies": { | ||
| "@platforma-sdk/package-builder": "catalog:" | ||
| } | ||
| } |
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