Not Found Error During Full Project Render Despite Successful File Generation

[kimmy190]

Description

Hello, I'm working a on quarto project currently on mac using vscode.

Issue
when running quarto render it gives me the error below despite the html file being created in the _site folder. For all the other qmd files, the html file is created within the same folder instead of the _site folder, however all the html files for the qmd files in the lecs folder are created in the _site folder.

ERROR: NotFound: No such file or directory (os error 2): rename '/website/lecs/w01/lec01.html' -> '/website/_site/lecs/w01/lec01.html'

This is an issue I get when I'm trying to render the whole thing altogether. When rendering only that lec01.qmd file using preview it works fine(the html is given successfully)

The lec01.qmd file has its seperate yml header inside the file and I'm suspecting that might be the issue but I'm not sure how this can be resolved

The project structure looks like this

website/
└─ _site/
└─ _quarto.yml
└─ lecs/
    └─ w01/
        └─ lec01.qmd  (has separate YAML header)
    └─ .... 

Inside the lec01.qmd it has a seperate yml header of

---
title: "Lec"
subtitle: "Lec"
format:
  revealjs:
    slide-number: true
    embed-resources: false
    show-notes: false
    chalkboard:
      src: chalkboard.json
      buttons: true
      boardmarker-width: 2
      chalk-width: 2
      chalk-effect: 1.0
    css: style.css
  html-math-method:
    method: mathjax
    url: "https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js"
---

And the quarto.yml folder contains these:

project:
  type: website
format:
  html:
    theme:
      light: [cosmo, theme.scss]
      dark: [cosmo, theme-dark.scss]
    mainfont: "Atkinson Hyperlegible"
    code-copy: true
    code-overflow: wrap
    toc: true
 

[cscheid]

Unfortunately, we need a full reproducible example to be able to help.

[mcanouil]

@kimmy190 Could you share a small self-contained "working" (reproducible) example to work with, i.e., a complete Quarto document or a Git repository? The goal is to make it as easy as possible for us to recreate your problem so that we can fix it: please help us help you! Thanks.

---

You can share a self-contained "working" (reproducible) Quarto document using the following syntax, i.e., using more backticks than you have in your document (usually four ````).
See https://quarto.org/bug-reports.html#small-is-beautiful-aim-for-a-single-document-with-10-lines.

If you have multiple files (and if it is absolutely required to have multiple files), please share as a Git repository.

R	Python
````qmd --- title: "Reproducible Quarto Document" format: html engine: knitr --- This is a reproducible Quarto document. {{< lipsum 1 >}} ```{r} x <- c(1, 2, 3, 4, 5) y <- c(1, 4, 9, 16, 25) plot(x, y) ``` {#fig-placeholder} {{< lipsum 1 >}} The end after @fig-placeholder. ````	````qmd --- title: "Reproducible Quarto Document" format: html engine: jupyter --- This is a reproducible Quarto document. {{< lipsum 1 >}} ```{python} import matplotlib.pyplot as plt x = [1, 2, 3, 4, 5] y = [1, 4, 9, 16, 25] plt.plot(x, y) plt.show() ``` {#fig-placeholder} {{< lipsum 1 >}} The end after @fig-placeholder. ````

Additionally and if not already given, please share the output of quarto check within a code block (i.e., using three backticks ```txt), see https://quarto.org/bug-reports.html#check.

[cderv]

I believe this could be related to this other issue (where I explained the problem):

• Getting file not found errror when setting revealjs setting #6809 (comment)

If quarto render does produce a HTML output and a revealjs output for lec01.qmd, then there will be a conflict in the output file name and resource, as we don't handle this double HTML output case correctly yet.
And as you are on a website, lec01.qmd will be rendered to HTML too.

This conflict also happens in the cleaning and moving of resources, and so when the second format wants to move the file to _site, no more file as it has already been moved.

This is a known issue we need to fix. Having a reproducible example of your situation would help us confirm and fix all variations of this issue.

Thank you !