diff --git a/man/genepop_colony.Rd b/man/genepop_colony.Rd index bdcab18..033a485 100644 --- a/man/genepop_colony.Rd +++ b/man/genepop_colony.Rd @@ -4,8 +4,8 @@ \alias{genepop_colony} \title{Convert Genepop to Colony format.} \usage{ -genepop_colony(genepop, where.PLINK, where.PGDspider, denote.missing = "000", - allocate.PGD.RAM = 1, path) +genepop_colony(genepop, where.plink, where.pgdspider, denote.missing = "000", + allocate.pgd.ram = 1, path) } \arguments{ \item{genepop}{the genepop data to be manipulated. This is read in as a complete file path. @@ -14,13 +14,13 @@ or a single comma deliminated row of loci names followed by the locus data. Popu separated by "Pop". Each individual ID is linked to the locus data by " , " (space,space space) and is read in as as a single row (character).} -\item{where.PLINK}{A file path to the PLINK installation folder.} +\item{where.plink}{A file path to the PLINK installation folder.} -\item{where.PGDspider}{A file path to the PGDspider installation folder.} +\item{where.pgdspider}{A file path to the PGDspider installation folder.} \item{denote.missing}{The value that denotes missing data in your input file} -\item{allocate.PGD.RAM}{An integer value in GB to specify the maximum amount of RAM to allocate to PGDspider. The default is 1 GB, which should be sufficient for most analyses.} +\item{allocate.pgd.ram}{An integer value in GB to specify the maximum amount of RAM to allocate to PGDspider. The default is 1 GB, which should be sufficient for most analyses.} \item{path}{file path to directory where the Colony files (4) will be saved.} }