Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add ability to upload (OME-)Zarr volume annotations #8395

Open
2 tasks
dstansby opened this issue Feb 13, 2025 · 1 comment
Open
2 tasks

Add ability to upload (OME-)Zarr volume annotations #8395

dstansby opened this issue Feb 13, 2025 · 1 comment

Comments

@dstansby
Copy link

Detailed Description

I'm trying to upload a volume annotation that is in a zarr array: I have tried uploading both the 'raw' zarr array, and an OME-Zarr dataset (
494.08um_hippocampus1_label.ome.zarr.zip), and when I try to drag and drop zip files of these into the webknossos annotations tab I get an error that says "NML upload failed". The docs say

To import a volume annotation, ensure it is in the correct format (WKW or Zarr)

So I expected this to work. But maybe it is not implemented, and this is a feature request instead of a bug?

Context

  • Specific to long-running jobs (set jobsEnabled=true in application.conf)
  • Specific to webknossos.org (set isDemoInstance=true in application.conf)
@normanrz
Copy link
Member

We don't really support uploading segmentation annotations at this point. It possible to upload segmentation layers as part of datasets and then edit the segmentation via the annotation tools, though.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

3 participants