pick up csi indices for SAMTOOLS_FLAGSTATS_BAM_INPUT

scarlhoff · Jul 25, 2024 · 7765f16 · 7765f16
1 parent 2fe53bd
commit 7765f16
Showing 1 changed file with 1 addition and 4 deletions.
diff --git a/workflows/eager.nf b/workflows/eager.nf
@@ -207,10 +207,7 @@ workflow EAGER {
         //
         // MODULE: flagstats of user supplied input BAMs
         //
-        ch_bam_bai_input = ch_samplesheet_bams
-                                .join(SAMTOOLS_INDEX_BAM_INPUT.out.bai)
-
-        SAMTOOLS_FLAGSTATS_BAM_INPUT ( ch_bam_bai_input )
+        SAMTOOLS_FLAGSTATS_BAM_INPUT ( ch_bams_from_input )
         ch_versions           = ch_versions.mix( SAMTOOLS_FLAGSTATS_BAM_INPUT.out.versions )
         ch_flagstat_input_bam = SAMTOOLS_FLAGSTATS_BAM_INPUT.out.flagstat // For endorspy